Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24000 461 / 1e-160 Protein of unknown function (DUF819) (.1) AT5G52540 434 / 9e-150 Protein of unknown function (DUF819) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027507 [exp] 654 / 0 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10039273 [exp] 467 / 1e-162 AT5G52540 538 / 0.0 Protein of unknown function (DUF819) (.1) Lus10027508 [exp] 459 / 8e-160 AT5G52540 531 / 0.0 Protein of unknown function (DUF819) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142841 [exp] 533 / 0 AT5G24000 457 / 5e-159 Protein of unknown function (DUF819) (.1) Potri.004G079300 [exp] 444 / 1e-153 AT5G52540 439 / 8e-152 Protein of unknown function (DUF819) (.1) Potri.017G142882 [exp] 112 / 2e-28 AT5G24000 77 / 2e-16 Protein of unknown function (DUF819) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF05684 [flax] [poplar] DUF819 Protein of unknown function (DUF819)
Representative CDS sequence Show only first row Show all	>Lus10039272 pacid=23175472 polypeptide=Lus10039272 locus=Lus10039272.g ID=Lus10039272.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCCGTGTCGCAGTTACTTCATCGTCCTTTCTCATCACTTTCACCCACCTCCTCCTCTTCTTCTTCTTTTTCTTCTTCGTCTTCCGTTTCCG TACTATCTCCAGGAAGTAACATCTCCGTCACTCTCTCAACCCACAGTGAGCATTCTCCACGGATATGGTGGAAGGACAGGAGACCTCGCATGCTGACTGA AGCCTTTTCACCGCTGAGGAACCCGATTATATCTCCAGACGACCACTGGGGAACCTGGACGGCTCTCTTTGCCGCCGGAGCTTTCGGTGTCTGGTCTGAA AGAACGAAGCTAGGGAGCATGGTGAGTGCGGCGTTGGTGAGCACGTTGGTAGGGCTAGCTGCCAGCAATTTGGGGATAATCCCTTACGAAGCGAAGGCGT ATTCCATCGTAATGGAGTTTCTGCTTCCCATTACCGTTCCTTTGCTGCTGTTCAGAGCTGACTTGCGGAATGTAATTCAGTCCACTGGAAAACTTCTCTT GGCTTTCCTTCTTGGTTCAGTGGGAACTGTTATTGGAACTTTAGTGGCATTTCTGCTGGTGCCTATGAGATCTCTTGGTCAAGACAACTGGAAGATAGCT TCTGCTCTGATGGGAAGCTATATCGGCGGAGCTGTTAATTATGTAGCGGTTTCAGAAGCTCTGGGCACTTCTCCGTCAGTTGTGGCAGCAGGAAAAGCCG CAGACAATGTTCTTTCTGCATTATACTTCATGGTCCTCTTTGCATTAGCTGCAAGAATACCTCGAGAGACAACAACAATGTCGTCAACTAATGAGGTTGA AGCGGCTGCTACATTAGATCCTGAAGCAAATAACTCCGTCCGACAAACAGTTACAGCTGTTGCCGTCTCCTTTTCCATATGCAAGGCTGCAACATTCCTC ACACAGTCCTTCAAGATTCAAGGAGGAACTCTCCCAGCTGTGACCGCTATAGTTGTTTTCCTAGCAACATCGTTTCCGAAACAATTCCGTCACCTTGCGC CTACTGGCGATACTCTAGCTGTGGTTCTGATGCAGGTGTTCTTTGCTGTGGTGGGAGCTGGTGGGAGCATATTGAATGTGATAAACACAGCACCTAGTAT ATTCCTGTTTGCTCTGATTCAAGTGGCTGTACATCTTGCTGTGGTTCTGGGATTGGGGAAGCTGCTGCGGTTCGATCTTAAGCTGTTGGTTCTGGCATCG AACGCCAATGTTGGGGGCCCTACGACAGCTTGCGGAATGGCCACAGCTAAAGGGTGGAGTTCTCTTGTTGTTCCGGCGATTCTCGCCGGCATCTTTGGTA TTTCCATGTCAACTTTTCTTGGCATTGGCTTTGGAATGATGGTCCTGAGACACCTGTAA
AA sequence Show only first row Show all	>Lus10039272 pacid=23175472 polypeptide=Lus10039272 locus=Lus10039272.g ID=Lus10039272.BGIv1.0 annot-version=v1.0 MASAVSQLLHRPFSSLSPTSSSSSSFSSSSSVSVLSPGSNISVTLSTHSEHSPRIWWKDRRPRMLTEAFSPLRNPIISPDDHWGTWTALFAAGAFGVWSE RTKLGSMVSAALVSTLVGLAASNLGIIPYEAKAYSIVMEFLLPITVPLLLFRADLRNVIQSTGKLLLAFLLGSVGTVIGTLVAFLLVPMRSLGQDNWKIA SALMGSYIGGAVNYVAVSEALGTSPSVVAAGKAADNVLSALYFMVLFALAARIPRETTTMSSTNEVEAAATLDPEANNSVRQTVTAVAVSFSICKAATFL TQSFKIQGGTLPAVTAIVVFLATSFPKQFRHLAPTGDTLAVVLMQVFFAVVGAGGSILNVINTAPSIFLFALIQVAVHLAVVLGLGKLLRFDLKLLVLAS NANVGGPTTACGMATAKGWSSLVVPAILAGIFGISMSTFLGIGFGMMVLRHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24000			Protein of unknown function (D...		Lus10039272 [exp]	0	1
AT3G05170			Phosphoglycerate mutase family...		Lus10035350 [exp]	4.2	0.7829
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10025575 [exp]	4.8	0.8297
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	6.2	0.7926
AT3G45620			Transducin/WD40 repeat-like su...		Lus10034751 [exp]	10.5	0.7999
AT4G37440			unknown protein		Lus10014864 [exp]	10.8	0.7908
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	11.8	0.7880
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	13.0	0.7827
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	18.7	0.7589
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10002636 [exp]	19.2	0.7757
AT1G64850			Calcium-binding EF hand family...		Lus10010653 [exp]	23.2	0.7599

Compare expression of checked genes

Lus10039272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.