Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52540 468 / 5e-163 Protein of unknown function (DUF819) (.1) AT5G24000 377 / 2e-127 Protein of unknown function (DUF819) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027508 [exp] 712 / 0 AT5G52540 531 / 0.0 Protein of unknown function (DUF819) (.1) Lus10039272 [exp] 420 / 4e-144 AT5G24000 498 / 3e-175 Protein of unknown function (DUF819) (.1) Lus10027507 [exp] 389 / 5e-124 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G079300 [exp] 477 / 9e-167 AT5G52540 439 / 8e-152 Protein of unknown function (DUF819) (.1) Potri.017G142841 [exp] 434 / 1e-149 AT5G24000 457 / 5e-159 Protein of unknown function (DUF819) (.1) Potri.017G142882 [exp] 96 / 1e-14 AT5G24000 77 / 2e-16 Protein of unknown function (DUF819) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF05684 [flax] [poplar] DUF819 Protein of unknown function (DUF819)
Representative CDS sequence Show only first row Show all	>Lus10039273 pacid=23175691 polypeptide=Lus10039273 locus=Lus10039273.g ID=Lus10039273.BGIv1.0 annot-version=v1.0 ATGGCGTCAAAGCTTCTCTTCTCCCACATCACTTGCTCGCCAACTCCGAATCCTGAGATCCAACCCTCGCGATTCCGTCCTCCCACACTAACAAATCTCA CCGTAGCCTCATCGTCGAGAAAATTCAGTCCCCTTTCCATCTCATCGCCGCCGTCAACCCACAACTTCCCTTCCCCTCTGCCCAATCGGACACCACCACA CCCGAACTCGACCCGATCCGTAACCGTCAGATCCACCTTCAATCTCCCTCTCATTTCTCCCCACGACAAATGGGGCATGTGGACTGCCCTCTTCGCCGCC GGCGCCTTCGGCATCTGGTCGGAGAGGACGAAGATCGGAAGCGCGTTGAGTGGGGCATTAGTGAGCACTTTAGTTGGATTAGCTGCTAGTAATCTAGGGT TAATATCATGCGAGTCTCCAGCTTATCCGATCGTTCTGGAGTTCCTTTTACCATTAGCAGTTCCTTTGCTTCTGTTTAGAGCTGACTTGCGCCGTGTGAT TCAGTCCACTGGCAAACTTCTCTTGGCTTTCCTGATTGGATCAGTTGCTACAACGATTGGAACAGTGTTGGCTTATCTGGCTGTCCCGATGAGATCACTT GGTCCTGATAGCTGGAAAATCGCAGCTGCTCTCATGGGCAGACACATTGGTGGAGCTGTTAACTATGTGGCCATTGCGGATGCTCTCGGTGTAACACCAT CAGTTCTTGCTGCTGGACTGGCTGCCGATAACGTTATCTGCGCTGTGTATTTCACCACACTGTTCGCAATTGCAGCCCGAGTCCCTCCAGAGTCTTCAAC CACATCTAATGATGTGGATGCATTAACTGATACCGGCGGTGAAAAGCTTCCTGTTCTCGAAGCTGCAACTTCCCTCGCGGTATCTTTCGCAATCTGCAAG GCCGGTTCTTACTTAACAAAGTCTATAGGAATGCAAGGAGGACCTTTGCCTGCCATAACCGCAATTGTCGTCGTATTAGCAACCACATTTCCTTCCCAGT TCAACTACCTCGCCCCATCTGGGGAAGCCATGGCGATGATTCTGATGCAGGTGTTCTTTGCAGTGGTTGGGGCGAGTGGGAGCGTGTGGTCAGTGATCCA GACTGCTCCGAGTATATTCATGTTCGCTCTTGTACAGATCGCAGTGCATCTGGGTGTAATCCTTGCTGTTGGGAGGTTGTTTGGGCTTGACCTGAAACTG TTGCTTTTGGCTTCGAATGCCAACGTCGGAGGGCCTACTACGGCTTGTGGAATGGCTACTGCTAAAGGATGGAACTCCATGGTTGTTCCTGCTATTCTCG CGGGTATCTTTGGTATCGCCATTGCTACTTTTCTTGGGATCGGATTCGGGTCTATGGTTCTTAAGTACATGTAA
AA sequence Show only first row Show all	>Lus10039273 pacid=23175691 polypeptide=Lus10039273 locus=Lus10039273.g ID=Lus10039273.BGIv1.0 annot-version=v1.0 MASKLLFSHITCSPTPNPEIQPSRFRPPTLTNLTVASSSRKFSPLSISSPPSTHNFPSPLPNRTPPHPNSTRSVTVRSTFNLPLISPHDKWGMWTALFAA GAFGIWSERTKIGSALSGALVSTLVGLAASNLGLISCESPAYPIVLEFLLPLAVPLLLFRADLRRVIQSTGKLLLAFLIGSVATTIGTVLAYLAVPMRSL GPDSWKIAAALMGRHIGGAVNYVAIADALGVTPSVLAAGLAADNVICAVYFTTLFAIAARVPPESSTTSNDVDALTDTGGEKLPVLEAATSLAVSFAICK AGSYLTKSIGMQGGPLPAITAIVVVLATTFPSQFNYLAPSGEAMAMILMQVFFAVVGASGSVWSVIQTAPSIFMFALVQIAVHLGVILAVGRLFGLDLKL LLLASNANVGGPTTACGMATAKGWNSMVVPAILAGIFGIAIATFLGIGFGSMVLKYM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52540			Protein of unknown function (D...		Lus10039273 [exp]	0	1
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	3.3	0.8968
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10016640 [exp]	4.9	0.8876
AT2G20820			unknown protein		Lus10033715 [exp]	5.5	0.8759
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10032189 [exp]	7.5	0.8946
AT5G64090			unknown protein		Lus10015829 [exp]	9.2	0.8649
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10018848 [exp]	9.9	0.8719
AT2G31440			unknown protein		Lus10025574 [exp]	11.0	0.8514
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10008615 [exp]	11.2	0.8618
AT5G41460			Protein of unknown function (D...		Lus10024663 [exp]	11.2	0.8691
AT3G07950			rhomboid protein-related (.1)		Lus10036521 [exp]	11.3	0.8849

Compare expression of checked genes

Lus10039273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.