Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24010 937 / 0 Protein kinase superfamily protein (.1) AT3G46290 686 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 672 / 0 Protein kinase superfamily protein (.1) AT5G54380 648 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT4G39110 639 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 634 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 622 / 0 Protein kinase superfamily protein (.1) AT3G51550 565 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT2G23200 555 / 0 Protein kinase superfamily protein (.1) AT1G30570 546 / 0 HERK2 hercules receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027509 [exp] 1519 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10028140 [exp] 691 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 688 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 626 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10021632 [exp] 617 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10000562 [exp] 612 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10017478 [exp] 607 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 602 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10003312 [exp] 571 / 0 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143049 [exp] 1000 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 954 / 0 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.009G026600 [exp] 714 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 709 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.011G128000 [exp] 646 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G405500 [exp] 644 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.010G213200 [exp] 637 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.015G061700 [exp] 625 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 613 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 610 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0661 [flax] [poplar] Gain PF06697 [flax] [poplar] DUF1191 Protein of unknown function (DUF1191)
Representative CDS sequence Show only first row Show all	>Lus10039274 pacid=23175663 polypeptide=Lus10039274 locus=Lus10039274.g ID=Lus10039274.BGIv1.0 annot-version=v1.0 ATGGAGCTCAAATTCTTCTTCTTCTGCTTCCTTTTCTTCACCCTTTTCACACTCTCTTCATCTTTTGTCCCAGCCGACAACTACCTCCTCAACTGCGGCT CCACCACTCCCGCCTCCATCAACAACAGGCTCTTCCTCGCCGATTCCGATTTCCTCCTCTCCGGTGGAAAAAAATCCACCTCTCTGACAAACCAAACCCT GTCGTCGGAGACGACGAACTCGCTTTACGCCACCGCCAGAGTCTTTACCGCCGCCTCCTCCGGCTACAAATTCAACATCAAGCAGAACGGGACCCACTTT GTACGCTTCCACTTCTCCCCTTTCCCTTCCAAATCTTTCAACCTGTCCGCTTCCAAATTCACCGTCATGGTCAACGGTGAGTCCGTCTTGCGAGACTTCG GCGCCGAGAATCTCGTAATCAAGGAGTACATCTTGAGAATCGACGGGGAGGAGCTCCGGATCCAGTTCCGACCCGGGTCAGGCGGGTCGGAGTTCGGGTT CGTGAACGCGATCGAGGTTTTCTCAGCTCCAAAAGGGTTGATAATCGACGAAGGAGTCAGGTTAGTCGGGGATAAAATCGGGGATTTCGAAAATCTCTCG TCAAACGTGTTGGAGACGGTTCATAGGGTTAACGTCGGGGGATCCAAAGTGACGCCGTTTAACGATACCTTGTGGAGAAATTGGATAACGGACGATGAGT TTCTCGTTCTCGAATCGGCGGCGAAGAAGGTCTCGTCAACTCACACGCCGAACTACCAGGAAGGGGGAGCCACGAGGGATTCGGCTCCGGATAGCGTGTA CATGACGGCGAGATCCATGAACAGAGAAAACGCCACTGTTGGTGCCAAGTTTAACGTAAGTTGGACTTTCCCGGTTGGTTCTAGCGGGGTTCAGCATTTG ATTCGGTTGCATTTCTGTGATATAGTTAGCTCGGGGCTGAATCAGTTGTATTTCAATGTTTACATTAACGACTACGAGGGATACAAGGATTTGGATTTGT CGTCGTTGACTTTCCACATGCTTGCGTCTCCGATGTATGTTGACTTCGTTGCTGACTCTGACGGGTCAGGGGATGTGAGGGTCAGCGTTGGGCCGTCTGA TCTGAGCAGTTCGTCGAAGGTGAACGCGATTCTGAATGGAGTTGAGATAATGAAGATGGTGAATCTCGCTGGGTTTTCGGGTAGAAAGAAGAGGATGATA ACATGGGTTGCGGTTGGTTCGGTTTTGGGTGGGGTTGCGTTGTTGGGACTGGTTGGGTTTGTGATTCTCTGTGCTTGTAGATGTAAGAAGAAGGAGAACA AGAGGGCTAAGACGAGACGTTCTGAAAGTTCAGGATGGACGCCATTACGTGGAGCTGGTAGTTTAGGAAGCAGAATGTCTGAGCTTACTGTGACCAGATC ACCAGCTGGGTACAGCATGAAGATCCCTTTTGACGATATCCAATTCGCTACAAAGAATTTCGACAAGAGCTTGATCATCGGAATGGGAGGGTTCGGAATG GTGTATAAAGGTGTCCTTAAGGGCAACAACACCAAGATCGCTGTAAAAAGAGGCGTCCCTGGTTCTCGCCAGGGACTACCCGAGTTCCACTCGGAGATCA CTATTCTATCCAGGATCCGCCACAGGCATCTTGTCTCTTTGGTTGGTTACTGCGAGGAACAATCCGAGATGATTCTAGTCTACGAGTACATGGAGCACGG CCCCTTAAAGTGCCATTTATACGGCCAATTAGCTCGAGAAAAGCATTCGCCGCTCTCGTGGAAGCAAAGACTCGATATATGCATCGGTGCAGCGAGGGGC ATACATTATCTCCATACAGGGTTCATCCCGGGAATCATCCATCGGGACATCAAGTCGACGAACATCTTGCTTGACGAGAGTTACGAGGCCAAAGTTGCTG ACTTTGGCCTCTCGAGAAGCGGACCGTGTCTGGACGAGACACATGTGAGCACGGGAGTGAAGGGTAGTTTCGGTTATTTAGACCCGGAGTACTTTCGAAG GCAGCAGTTGACGGATAAGTCGGATGTTTACTCGTTCGGAGTCGTGATGCTGGAAGTGCTATGTGCTAGGCCGGCGGTTGACCCTTTGCTTGCGAGGGAG CAAGTCAACTTGGCGGAATGGGCGTTACATTGGAAGCAGAACGGGAAGCTGGACCAGATCGTGGATCCGAATATCAAGGGAGAGATCAAGCAGAGCTCGC TCGAGAAGTTTGGAGAGACGGCGGAGAAGTGTTTGGCCGAGTATGGTGTGGATCGGCCGAGTATGGGAGACGTGCTGTGGAATTTGGAGTATGCACTTCA GCTTCAGGAATCTGGACCGTTGAATGCTGCAGAAGATGGTGGTGTGATGGATGTCCCTCTAGTTTCGGCGATGGATGTTCACGGTGGGGGGAATGAAGTG AACTATAGCTCGGATGTGTCGACAACTCAGGTTTTCTCTCAGCTCATTACCAACGAAGGGCTTGGAGAAGAAAATTTGGGCCGAAGCGGAAATCCGAATA TCCAAAACGGTAGGCCCAGTCACGATTGA
AA sequence Show only first row Show all	>Lus10039274 pacid=23175663 polypeptide=Lus10039274 locus=Lus10039274.g ID=Lus10039274.BGIv1.0 annot-version=v1.0 MELKFFFFCFLFFTLFTLSSSFVPADNYLLNCGSTTPASINNRLFLADSDFLLSGGKKSTSLTNQTLSSETTNSLYATARVFTAASSGYKFNIKQNGTHF VRFHFSPFPSKSFNLSASKFTVMVNGESVLRDFGAENLVIKEYILRIDGEELRIQFRPGSGGSEFGFVNAIEVFSAPKGLIIDEGVRLVGDKIGDFENLS SNVLETVHRVNVGGSKVTPFNDTLWRNWITDDEFLVLESAAKKVSSTHTPNYQEGGATRDSAPDSVYMTARSMNRENATVGAKFNVSWTFPVGSSGVQHL IRLHFCDIVSSGLNQLYFNVYINDYEGYKDLDLSSLTFHMLASPMYVDFVADSDGSGDVRVSVGPSDLSSSSKVNAILNGVEIMKMVNLAGFSGRKKRMI TWVAVGSVLGGVALLGLVGFVILCACRCKKKENKRAKTRRSESSGWTPLRGAGSLGSRMSELTVTRSPAGYSMKIPFDDIQFATKNFDKSLIIGMGGFGM VYKGVLKGNNTKIAVKRGVPGSRQGLPEFHSEITILSRIRHRHLVSLVGYCEEQSEMILVYEYMEHGPLKCHLYGQLAREKHSPLSWKQRLDICIGAARG IHYLHTGFIPGIIHRDIKSTNILLDESYEAKVADFGLSRSGPCLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVMLEVLCARPAVDPLLARE QVNLAEWALHWKQNGKLDQIVDPNIKGEIKQSSLEKFGETAEKCLAEYGVDRPSMGDVLWNLEYALQLQESGPLNAAEDGGVMDVPLVSAMDVHGGGNEV NYSSDVSTTQVFSQLITNEGLGEENLGRSGNPNIQNGRPSHD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24010			Protein kinase superfamily pro...		Lus10039274 [exp]	0	1
AT5G24010			Protein kinase superfamily pro...		Lus10027509 [exp]	5.5	0.7951
AT5G02420			unknown protein		Lus10038653 [exp]	5.5	0.7632
AT1G18480		AtSLP2	Shewenella-like protein phosph...		Lus10014985 [exp]	8.2	0.8217
AT5G12300			Calcium-dependent lipid-bindin...		Lus10036036 [exp]	13.3	0.8544
AT4G36750			Quinone reductase family prote...		Lus10041718 [exp]	18.2	0.7916
AT2G20780		AtPLT4	Major facilitator superfamily ...		Lus10033702 [exp]	19.7	0.8340
AT1G25370			Protein of unknown function (D...		Lus10035144 [exp]	20.5	0.8509
AT1G76180		ERD14	EARLY RESPONSE TO DEHYDRATION ...		Lus10021240 [exp]	21.4	0.8162
AT3G19950			RING/U-box superfamily protein...		Lus10010179 [exp]	27.1	0.7427
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10037681 [exp]	27.5	0.8034

Compare expression of checked genes

Lus10039274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.