Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25680 339 / 2e-118 PPPDE putative thiol peptidase family protein (.1) AT4G25660 333 / 6e-116 PPPDE putative thiol peptidase family protein (.1) AT2G25190 98 / 2e-24 PPPDE putative thiol peptidase family protein (.1) AT1G47740 91 / 3e-21 PPPDE putative thiol peptidase family protein (.1.2) AT5G25170 89 / 5e-21 PPPDE putative thiol peptidase family protein (.1) AT1G80690 89 / 6e-21 PPPDE putative thiol peptidase family protein (.1) AT5G47310 89 / 8e-21 PPPDE putative thiol peptidase family protein (.1) AT4G17486 88 / 1e-20 PPPDE putative thiol peptidase family protein (.1.2) AT4G31980 87 / 4e-19 unknown protein AT3G07090 59 / 6e-10 PPPDE putative thiol peptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027510 [exp] 523 / 0 AT4G25680 346 / 3e-121 PPPDE putative thiol peptidase family protein (.1) Lus10038841 [exp] 397 / 2e-141 AT4G25680 343 / 2e-120 PPPDE putative thiol peptidase family protein (.1) Lus10014960 [exp] 394 / 2e-140 AT4G25680 341 / 1e-119 PPPDE putative thiol peptidase family protein (.1) Lus10007844 [exp] 100 / 2e-25 AT4G17486 277 / 3e-95 PPPDE putative thiol peptidase family protein (.1.2) Lus10004755 [exp] 100 / 4e-25 AT4G17486 273 / 2e-93 PPPDE putative thiol peptidase family protein (.1.2) Lus10018326 [exp] 97 / 3e-24 AT5G25170 314 / 3e-110 PPPDE putative thiol peptidase family protein (.1) Lus10017127 [exp] 97 / 3e-24 AT5G25170 312 / 3e-109 PPPDE putative thiol peptidase family protein (.1) Lus10040170 [exp] 97 / 4e-24 AT4G17486 283 / 9e-98 PPPDE putative thiol peptidase family protein (.1.2) Lus10004372 [exp] 97 / 1e-22 AT5G47310 244 / 1e-77 PPPDE putative thiol peptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143132 [exp] 380 / 2e-134 AT4G25680 331 / 2e-115 PPPDE putative thiol peptidase family protein (.1) Potri.004G079800 [exp] 379 / 6e-134 AT4G25680 339 / 1e-118 PPPDE putative thiol peptidase family protein (.1) Potri.003G080300 [exp] 99 / 6e-25 AT5G47310 295 / 9e-102 PPPDE putative thiol peptidase family protein (.1) Potri.018G021700 [exp] 97 / 6e-24 AT5G25170 301 / 2e-104 PPPDE putative thiol peptidase family protein (.1) Potri.006G261500 [exp] 97 / 8e-24 AT5G25170 313 / 5e-109 PPPDE putative thiol peptidase family protein (.1) Potri.001G154400 [exp] 96 / 1e-23 AT5G47310 308 / 4e-107 PPPDE putative thiol peptidase family protein (.1) Potri.001G047800 [exp] 90 / 1e-21 AT1G80690 298 / 2e-103 PPPDE putative thiol peptidase family protein (.1) Potri.003G180400 [exp] 87 / 2e-20 AT1G80690 303 / 1e-105 PPPDE putative thiol peptidase family protein (.1) Potri.T126004 [exp] 85 / 2e-19 AT1G47740 337 / 2e-117 PPPDE putative thiol peptidase family protein (.1.2) Potri.009G113168 [exp] 85 / 2e-19 AT1G47740 335 / 6e-117 PPPDE putative thiol peptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF05903 [flax] [poplar] Peptidase_C97 PPPDE putative peptidase domain
Representative CDS sequence Show only first row Show all	>Lus10039275 pacid=23175633 polypeptide=Lus10039275 locus=Lus10039275.g ID=Lus10039275.BGIv1.0 annot-version=v1.0 ATGACGGAAGTGATATTGCACATATACGATGTGACCAACAGTGGATCGGAGAAGACGAACACGACGATCATGCAGATCAACAAGATCTTCAAGGACGGTA TTGGCCTCGGCGGCATCTTCCACAGTGCTATTCAGGTTTATGGAGAAGATGAATGGTCGTTTGGCTTTTGTGAAATTGGAACTGGGGTGTTCAATTGCCC TTCCGGAAAGAATCCAATGTATACATACCGTGAAAGCATTGTGCTTGGGAAAACCAACTTTTCACGCATGAAAGTGAATCAGATCCTACGGGAACTTAGT TGGGAATGGCCTGGAAATTGTTATGATCTTTTAGCCAAGAACTGTAATCACTTCTGTGATGAGCTCTGTGAAAAGCTAGGCGTCCCAAAACTTCCAGGCT GGGTTAACCGTTTTGCCAATGCCGGTGATACTGCTGTCGAAATTGCTGGAAACACAGCCCTACGATTCAGACAAGCTAAAACAGAGATTGTCTCAGCAAG TAAAGTAGCCTACCGTTTCCTACTGGGTGTTACCTCCAACAACGGTTCAACAGTCGAATCCCCTGGAAACTCCAACGGAGGAGGTTCTCCTAGGACGCAA TCAACTTGGTTCAAGAATCTCGTTACCAACGGGGCAAAACCTTCTACTAGTACAGAAGTCGACTCGCTGCAGGTTGATTCGGTTTCCACGCCGCCACAAA TTCAGCAAGTTTCGCGGCAGGAAGATTCAGAGGTATCACACCAGCAGAATGGACAGGGAGAGGACTTGCACGGTCTGCTGACACACAACTCGAGGCACTA CGACTGA
AA sequence Show only first row Show all	>Lus10039275 pacid=23175633 polypeptide=Lus10039275 locus=Lus10039275.g ID=Lus10039275.BGIv1.0 annot-version=v1.0 MTEVILHIYDVTNSGSEKTNTTIMQINKIFKDGIGLGGIFHSAIQVYGEDEWSFGFCEIGTGVFNCPSGKNPMYTYRESIVLGKTNFSRMKVNQILRELS WEWPGNCYDLLAKNCNHFCDELCEKLGVPKLPGWVNRFANAGDTAVEIAGNTALRFRQAKTEIVSASKVAYRFLLGVTSNNGSTVESPGNSNGGGSPRTQ STWFKNLVTNGAKPSTSTEVDSLQVDSVSTPPQIQQVSRQEDSEVSHQQNGQGEDLHGLLTHNSRHYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25680			PPPDE putative thiol peptidase...		Lus10039275 [exp]	0	1
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10018242 [exp]	1.7	0.8865
AT1G27310		NTF2A	nuclear transport factor 2A (....		Lus10035202 [exp]	5.7	0.8799
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10025384 [exp]	6.8	0.8802
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10026404 [exp]	7.9	0.8668
AT3G06150			unknown protein		Lus10004424 [exp]	9.4	0.8782
AT1G14360		ATUTR3, UTR3	UDP-galactose transporter 3 (....		Lus10030495 [exp]	10.4	0.8420
AT1G51370			F-box/RNI-like/FBD-like domain...		Lus10027020 [exp]	11.5	0.8515
AT1G75230			DNA glycosylase superfamily pr...		Lus10033215 [exp]	12.7	0.8675
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10001387 [exp]	12.8	0.8552
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	13.0	0.8770

Compare expression of checked genes

Lus10039275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.