Plant FIBer expression Database

Lus10039276 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G25670 123 / 2e-35 unknown protein
AT4G25690 116 / 8e-33 unknown protein
AT5G52550 103 / 4e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027511
[exp]
279 / 2e-96 AT4G25670 153 / 3e-47 unknown protein
Lus10038842
[exp]
109 / 1e-29 AT4G25670 149 / 3e-45 unknown protein
Lus10014961
[exp]
102 / 2e-27 AT4G25670 154 / 5e-48 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G079900
[exp]
144 / 3e-43 AT4G25670 159 / 2e-49 unknown protein
Potri.017G143215
[exp]
132 / 8e-39 AT4G25670 151 / 4e-46 unknown protein
PFAM info
Representative CDS sequence
>Lus10039276 pacid=23175556 polypeptide=Lus10039276 locus=Lus10039276.g ID=Lus10039276.BGIv1.0 annot-version=v1.0
ATGGATAGCTTAGCGAGCAATAAGATGCTGCAGCCTCCGGCTGTAAGAAAAGTGAAGAAGAAAGAGGCGAAAGGCGAACTGGATCGCCTGAAACAGGCTG
AGAAGAAGAAGAGGCGTCTAGAGAAAGCTCTTGCTACTTCTGCAGCCATTAGGTCTGAACTGGAGAAGAAAAAGCAGAAAAAGAAAGAAGAACAACAGAG
GCTCGACGAAGAAGGAGCTTCCATAGCTGAGGCAGTAGCTCTGCAAGTCCTCCTGGGTGAGGACTCTGATGAATCCGGCTTCATCAACCCGTGGGATCGT
GCATTTCTCCCTCGTCAGGACTTCTCAAGGCATTCGCTCGGAAAAATCGGGTGGATCCCTAATAATTATTCTGCTGCCTACAATGCGGCAGATGACAATG
GTGAGTGGTCTTCGTCGTTCTCTTTTAACTCTCTAGGAAGGAATCATCTACGTGGTGGTGGTGGATCGTACTTTGATGATGATGGGAGTTGGGGAAGAAC
GGAGTATGCTGCTGCTGGTCTCATTGCTGCTCAGGCTGTTTCTTCTCTCAGGATCAGAGAGGATTCTACTGTCGTTGACGCATTCGTCTTGGATGGTATG
TTGAGGGGATAA
AA sequence
>Lus10039276 pacid=23175556 polypeptide=Lus10039276 locus=Lus10039276.g ID=Lus10039276.BGIv1.0 annot-version=v1.0
MDSLASNKMLQPPAVRKVKKKEAKGELDRLKQAEKKKRRLEKALATSAAIRSELEKKKQKKKEEQQRLDEEGASIAEAVALQVLLGEDSDESGFINPWDR
AFLPRQDFSRHSLGKIGWIPNNYSAAYNAADDNGEWSSSFSFNSLGRNHLRGGGGSYFDDDGSWGRTEYAAAGLIAAQAVSSLRIREDSTVVDAFVLDGM
LRG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G25670 unknown protein Lus10039276
[exp]
0 1
AT2G46080 unknown protein Lus10036385
[exp]
1.0 0.9285
AT1G25682 Family of unknown function (DU... Lus10041495
[exp]
1.4 0.9218
AT4G25670 unknown protein Lus10027511
[exp]
2.2 0.9178
AT2G36900 ATMEMB11, MEMB1... membrin 11 (.1.2) Lus10005690
[exp]
2.6 0.9092
AT1G07710 Ankyrin repeat family protein ... Lus10025287
[exp]
3.9 0.8981
AT1G15270 Translation machinery associat... Lus10037543
[exp]
4.9 0.9156
AT5G11680 unknown protein Lus10027000
[exp]
5.7 0.9082
AT3G45310 Cysteine proteinases superfami... Lus10034895
[exp]
5.7 0.9201
AT3G24315 ATSEC20 Sec20 family protein (.1) Lus10023717
[exp]
6.0 0.9042
AT1G22040 Galactose oxidase/kelch repeat... Lus10020960
[exp]
7.1 0.9040

Lus10039276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.