Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22400 451 / 3e-155 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22340 442 / 9e-152 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22380 437 / 8e-150 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT1G22360 436 / 1e-149 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 435 / 4e-149 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G78270 424 / 7e-145 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT5G59590 216 / 2e-64 UGT76E2 UDP-glucosyl transferase 76E2 (.1) AT3G11340 213 / 2e-63 UGT76B1 UDP-dependent glycosyltransferase 76B1, UDP-Glycosyltransferase superfamily protein (.1) AT4G15500 210 / 4e-62 UGT84A4 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 209 / 2e-61 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013924 [exp] 640 / 0 AT1G22400 551 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013923 [exp] 632 / 0 AT1G22400 537 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013922 [exp] 618 / 0 AT1G22400 533 / 0.0 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013920 [exp] 604 / 0 AT1G22400 488 / 3e-170 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) Lus10013925 [exp] 548 / 0 AT1G22380 560 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10000993 [exp] 542 / 0 AT1G22380 563 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10024583 [exp] 458 / 3e-158 AT1G22380 598 / 0.0 UDP-glucosyl transferase 85A3 (.1) Lus10041055 [exp] 454 / 2e-156 AT1G22360 610 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Lus10032220 [exp] 448 / 3e-154 AT1G22380 601 / 0.0 UDP-glucosyl transferase 85A3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G052166 [exp] 502 / 2e-175 AT1G22360 607 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052300 [exp] 501 / 2e-175 AT1G22360 603 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G313000 [exp] 488 / 3e-170 AT1G22360 564 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052000 [exp] 480 / 7e-167 AT1G22360 617 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.001G312600 [exp] 479 / 3e-166 AT1G22360 586 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052400 [exp] 478 / 6e-166 AT1G22360 620 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052232 [exp] 476 / 3e-165 AT1G22360 622 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098300 [exp] 473 / 1e-163 AT1G22360 602 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.017G052100 [exp] 469 / 1e-162 AT1G22360 612 / 0.0 UDP-glucosyl transferase 85A2 (.1.2) Potri.002G098400 [exp] 462 / 1e-159 AT1G22360 640 / 0.0 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10039277 pacid=23175451 polypeptide=Lus10039277 locus=Lus10039277.g ID=Lus10039277.BGIv1.0 annot-version=v1.0 ATGAAACCGGTGGTCGCCGCCGCCAAACCCCAAAACCATCCGCCGCCGCAGCCACACGCCGTCTGCGTTCCCCTTCCGTTTCAAGGACACATAAATCCGA TGCTCCAAGTGGCGAAACTCCTCCACTCGCGAGGCTTCCACATAACCTTCGTCAACACAGAGTCCAACCACAACCGCCTCCTCAAGTCCTGGGGAGCCAC CGCAGCCCCCACCCTACCGCCGGGATTCAACTTCGAGACCTTCCCTGACGGCCTGCCGCTGTCGGACGACATGGACATAAGCCAGGTGGTCCAGTTGGTG TGCGATTCCATCCTCAACAACTGGTTGGCTCCGTTTAGGGATTTGGTACTCAGGCTTAACAACAAAGACGACGACGTTTCGCCCCGTGTTAGCTGTATCG TGTCCGACATTTCGATGGTGTTCACCCTCGATGTTGCTAAGGAGCTCGGAATTCCCGACGCGCTCTTCTCGGCTATGAACGCGTGTGCCACACTGGCTTA CCTCAGTTCTCATCGTCTTCTCGAAAGAGGCTTGGTTCCTCTTAAAGATTCAAGTTATATAACCAACGGGTATCTAGAAACTATCGTAGACTGCATTCCG GGATTAAACAAGAACGTTCGTCTCAAAGATCTTCCTACACCAGTTGTGAGAATTACGGATCGAAATGACACTGTTTTCAACTTCGCCCTGAAAAAGATCA AAAGGATTTCAGAAGCGTCCTCGGTAGTTTTCAACACATTTGAACCGTTGGAACAAGAAGCTCTCACGTATCTTTCGTCACTCTGTCCTAATCTCCTCAC CATCGGCCCACTCAACTCGCTCCTTCCTCGAATAATTACGGAAGACAAGCTAAAGAACATCAACACAAATCTATGGGAAGAACACCCCGAATCAGTTAAA TGGCTCGACTCTCAGGAGCCCAGCTCTGTTTTGTACGTGAATTTTGGAAGCACGACGATGGTTACTGCAGATCAACTTGCCGAATTCGCGTGGGGGCTAG CGAAAAGTGAGAAGCCGTTCTTGTGGATAATTAGACCCAATCTTGTTTTCGGGAATTCTTCGGTGCCTCTGTCCTTTGTCGAGGAGACAAAGGGCAGAGG CATGTTGGCAGGGTGGTGCGATCAGGAACGAGTTCTGAAGCACCCTGCAATAGGAGGCTTCCTAAGTCACATGGGGTGGAACTCGACGATAGAGAGCTTG TCGAACGGGATACCAATGATATGTTGGCCATATTTTGGGGACCACCCGACGATATGCTTCTACGCTTGTAGAGAATGGAAGGTCGGATTGGAGATTGAAA GTGAAGTAAAGAGCGAAGTTGTGGAAAAGCTTGTGAGGGAGGTTATGGAAGGGGAGAAAGGTAAGGAAATGAAGAGGAAAGCTATGGAGTGGAAAGTGAA GGTGGATGAAGCAACACAACCCGGTGGATCGTCGTTTCAAAATTTCGACAGATTCATTGGTGTGTTGTTACAGAACAAAAACAATTGA
AA sequence Show only first row Show all	>Lus10039277 pacid=23175451 polypeptide=Lus10039277 locus=Lus10039277.g ID=Lus10039277.BGIv1.0 annot-version=v1.0 MKPVVAAAKPQNHPPPQPHAVCVPLPFQGHINPMLQVAKLLHSRGFHITFVNTESNHNRLLKSWGATAAPTLPPGFNFETFPDGLPLSDDMDISQVVQLV CDSILNNWLAPFRDLVLRLNNKDDDVSPRVSCIVSDISMVFTLDVAKELGIPDALFSAMNACATLAYLSSHRLLERGLVPLKDSSYITNGYLETIVDCIP GLNKNVRLKDLPTPVVRITDRNDTVFNFALKKIKRISEASSVVFNTFEPLEQEALTYLSSLCPNLLTIGPLNSLLPRIITEDKLKNINTNLWEEHPESVK WLDSQEPSSVLYVNFGSTTMVTADQLAEFAWGLAKSEKPFLWIIRPNLVFGNSSVPLSFVEETKGRGMLAGWCDQERVLKHPAIGGFLSHMGWNSTIESL SNGIPMICWPYFGDHPTICFYACREWKVGLEIESEVKSEVVEKLVREVMEGEKGKEMKRKAMEWKVKVDEATQPGGSSFQNFDRFIGVLLQNKNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10039277 [exp]	0	1
AT2G23060			Acyl-CoA N-acyltransferases (N...		Lus10026088 [exp]	4.2	0.9061
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10002855 [exp]	7.9	0.8525
AT3G61980			serine protease inhibitor, Kaz...		Lus10010285 [exp]	8.6	0.8786
AT4G37580		UNS2, COP3, HLS...	UNUSUAL SUGAR RESPONSE 2, HOOK...		Lus10002314 [exp]	13.3	0.8340
AT4G27450			Aluminium induced protein with...		Lus10033418 [exp]	16.5	0.8773
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014688 [exp]	18.1	0.8677
AT2G12646			PLATZ transcription factor fam...		Lus10008031 [exp]	21.7	0.8745
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Lus10014801 [exp]	23.5	0.8730
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	28.5	0.8687
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10001648 [exp]	28.6	0.8498

Compare expression of checked genes

Lus10039277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.