Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25700 384 / 2e-134 BCH1, B1, CHY1, BETA-OHASE1 ,BETA-OHASE 1 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) AT5G52570 380 / 4e-133 BCH2, B2, CHY2, BETA-OHASE2 ,BETA-OHASE 2 BETA CAROTENOID HYDROXYLASE 2, beta-carotene hydroxylase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027515 [exp] 570 / 0 AT4G25700 419 / 1e-148 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G145700 [exp] 402 / 1e-141 AT4G25700 352 / 8e-122 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) Potri.004G074000 [exp] 373 / 4e-130 AT4G25700 363 / 3e-126 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2) Potri.001G100200 [exp] 356 / 1e-123 AT4G25700 323 / 1e-110 BETA CAROTENOID HYDROXYLASE 1, beta-hydroxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [flax] [poplar] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Lus10039278 pacid=23175610 polypeptide=Lus10039278 locus=Lus10039278.g ID=Lus10039278.BGIv1.0 annot-version=v1.0 ATGGCGGCAGGACTCTCCTCCACCGCCGCCATAGTCCCCAAACCTCTCCGTCAAATCCACGCCTCTCACCTCCTCCCGAAATTCCCCTTCCATCCTCCCG TTCGGCCGTACAACAATCCCACTCTCTTCCGCAGACCCCGGACGAAGTTCTCCGTCTGCTTCGTACTCGAGGAAACGAAGCGTAGCAGCAGCATCGATAG GATTCAGATTCGCGGCCAGGAAGAGGAAACAGTTATGGAGCCGGATGAGACGCCGACTACTACGAATCCGCCGCAGATCTTGCCGCCTCGAGTCGCGGAG AGGCTGGCGCGGAAGAAATCGGAGAGGACTACTTATCTTGTAGCCGCCGTCATGTCCAGCTTAGGTATCACTTCCATGGCCGTCATGTCCGTTTACTACC GCTTCCATTGGCAATTCGAGGGCGGAGAGATGCCGTTAGCGGAAATGTTCAGTACATTCGCCTTCTCAATGGGAGCTGCGGTGGGAATGGAATTTTGGGC GAGGTGGGCGCATAAGGCGCTGTGGCACTCTTCCTTGTGGCATATGCACGAGTCGCACCATCGGCCAAGAGAAGGGCCATTCGAGCTAAACGACGTGTTT GCGATAATCAACGCAGTTCCAGCGATTGGCCTATTGTCATACGGATTCTTCAACAAAGGCTTGATCCCTGGACTCTGTTTCGGAGCTGGACTGGGAATTA CTGTGTTTGGCATTGCATACATGTTTGTCCACGACGGGCTCGTCCACAAGAGGTTCCCGGTGGGTCCCATCGCCAACGTTCCTTATTTCCGCAAAGTAGC TGCCGCCCACCAGCTTCACCACTCGGAGAAGTTCGAAGGTGTCCCATATGGGTTGTTTCTAGGCCCCAAGGAACTTGAGGAAGTTGGAGGATTGGATGAA TTGGAGAAGGAGATTGATAGGAGGATCAAAGCTTACAACAAGGGTTTATAA
AA sequence Show only first row Show all	>Lus10039278 pacid=23175610 polypeptide=Lus10039278 locus=Lus10039278.g ID=Lus10039278.BGIv1.0 annot-version=v1.0 MAAGLSSTAAIVPKPLRQIHASHLLPKFPFHPPVRPYNNPTLFRRPRTKFSVCFVLEETKRSSSIDRIQIRGQEEETVMEPDETPTTTNPPQILPPRVAE RLARKKSERTTYLVAAVMSSLGITSMAVMSVYYRFHWQFEGGEMPLAEMFSTFAFSMGAAVGMEFWARWAHKALWHSSLWHMHESHHRPREGPFELNDVF AIINAVPAIGLLSYGFFNKGLIPGLCFGAGLGITVFGIAYMFVHDGLVHKRFPVGPIANVPYFRKVAAAHQLHHSEKFEGVPYGLFLGPKELEEVGGLDE LEKEIDRRIKAYNKGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25700		BCH1, B1, CHY1,...	BETA CAROTENOID HYDROXYLASE 1,...		Lus10039278 [exp]	0	1
AT3G55140			Pectin lyase-like superfamily ...		Lus10025290 [exp]	1.0	0.7984
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	7.5	0.6915
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10037167 [exp]	7.7	0.6842
AT4G03260			Outer arm dynein light chain 1...		Lus10018514 [exp]	9.1	0.6989
AT3G54500			unknown protein		Lus10024170 [exp]	11.8	0.6576
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Lus10019902 [exp]	13.6	0.6475
AT4G03260			Outer arm dynein light chain 1...		Lus10039729 [exp]	17.7	0.6518
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Lus10036760 [exp]	19.2	0.6080
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10036325 [exp]	26.3	0.6530
AT3G54500			unknown protein		Lus10039553 [exp]	26.5	0.5976

Compare expression of checked genes

Lus10039278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.