Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48950 621 / 0 Pectin lyase-like superfamily protein (.1) AT4G23500 578 / 0 Pectin lyase-like superfamily protein (.1) AT2G23900 577 / 0 Pectin lyase-like superfamily protein (.1) AT3G61490 566 / 0 Pectin lyase-like superfamily protein (.1.2.3) AT3G62110 427 / 1e-146 Pectin lyase-like superfamily protein (.1) AT4G23820 395 / 2e-134 Pectin lyase-like superfamily protein (.1) AT4G33440 382 / 1e-128 Pectin lyase-like superfamily protein (.1) AT5G49215 367 / 3e-123 Pectin lyase-like superfamily protein (.1.2) AT5G41870 363 / 9e-122 Pectin lyase-like superfamily protein (.1) AT3G42950 360 / 4e-120 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027516 [exp] 901 / 0 AT3G48950 629 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10007922 [exp] 583 / 0 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10028766 [exp] 565 / 0 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10017517 [exp] 562 / 0 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 421 / 5e-144 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003589 [exp] 400 / 6e-136 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 392 / 1e-132 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 383 / 2e-129 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 380 / 5e-128 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073900 [exp] 626 / 0 AT3G48950 635 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 625 / 0 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G100000 [exp] 600 / 0 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 596 / 0 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G162400 [exp] 585 / 0 AT3G61490 734 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.002G186900 [exp] 423 / 6e-145 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 423 / 8e-145 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G105800 [exp] 395 / 9e-134 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 392 / 3e-133 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 387 / 5e-131 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10039279 pacid=23175594 polypeptide=Lus10039279 locus=Lus10039279.g ID=Lus10039279.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTTCATATCAAACTCAGTCAGTCCGATGTGGCTAAGATTCTCGTCGCCGTTCTTCTGCTGTCGGGATCAGTGGGTCCCACGGCGGTAGCAG CTCAGGCCGCGGTTGGCGTGCCGACGGCGGCGCCGGTGCATTACTCGGCCTTGAACTGTAGGAAACACTCTGCGGTGATTACGGATTTCGGTGGCGTCGG AGATGGGACAACGTTGAACACAAAGGCGTTTCAGACCGCGATCGCTAATCTGAGCCAATTGGCAGCCGACGGTGGCGCTCAGCTGATTGTGCCGCCGGGG AAATGGTTGACGGGGAGTTTCAACCTCACTAGTCATTTCACCCTTTTCCTCCACAAGGACGCCGTGATATTGGGTTCTCAGAACATAGAAGATTGGCCAT TGGTGGCTCCTTTACCTTCATACGGACCGTCATTTGACGAAATCAAAGATGGAAGTAGGCATGCCAGCCTTCTCTTCGGAGACAACCTCACCGACGTTGT GATCACCGGTAACAACGGTACAATCGACGGCCAAGGTGAAACGTGGTGGAAGGCTTTCAAGGCGAAAACATTGAAAAACGCTAGGCCTTTCTTGTTTGAG ATTATGAACTGTGATCAGCTCCAAATCTCCAATGTCACCTTCACCAATTCTCCTATGTGGCATGTTCATCCCGTCTACTGCAGTAATGTGTTGATCCAGG GAGTGACCGTCTTGGCTCCAGTGGAAGTCCCCAACACAGATGGAATCAACCCAGATTCGTGCACAAACATCAGGATCGAAGACAGCTACATCGTCTCAGG TGACGACTGCATCGCCGTGAAATCTGGGATCGACCAGTACGGCATCAAAGTAGCCAAGCCAACAAAGCAGCTAGCCATCCGACGTGTCACCTGCATTTCT CCCGACAGCGCCCTCGTGGCACTCGGCAGCGAGATGTCGGGAGGAATACAGGACGTCCGCATCGAGGACCTCACCGCAATCAACACGCAGTCAGCAATCA GGATCAAGTCCGCCGTGGGCCGCGGAGGATACGTCAAGGACATCTTCGCCAGGAGGTTGACCTTCGACGGAATGGACAGGGCGTTCTGGATGTCCGGTAA CTACAAAACTCACGCCGACGAAGGGTTCGACCCGAATGCCCTGCCCGAGATTAACAACATCAATTACCGTGACGTTGTCGGACAAAAAGTCAACGTTTCG GGGATGCTGTCCGGGATCACGAAGGACCCGTTTACCGGGATTTGTATGTCGAATGTGACACTCAATTTAGGGCCTAAGGCTAAGGAGCTGCAGTGGAATT GTACGGATGTTGCCGGGACTACTAGCCGTGTGACTCCGAAGCCTTGTGATGCTTTGCCTGATAAAGCAGGATTAGACTGTCCGTTTCCTGAGGATAAGCT GCCGATCGATGGCCTCGTCCTGCAGAGTTGTACGACTGCTTGA
AA sequence Show only first row Show all	>Lus10039279 pacid=23175594 polypeptide=Lus10039279 locus=Lus10039279.g ID=Lus10039279.BGIv1.0 annot-version=v1.0 MASLHIKLSQSDVAKILVAVLLLSGSVGPTAVAAQAAVGVPTAAPVHYSALNCRKHSAVITDFGGVGDGTTLNTKAFQTAIANLSQLAADGGAQLIVPPG KWLTGSFNLTSHFTLFLHKDAVILGSQNIEDWPLVAPLPSYGPSFDEIKDGSRHASLLFGDNLTDVVITGNNGTIDGQGETWWKAFKAKTLKNARPFLFE IMNCDQLQISNVTFTNSPMWHVHPVYCSNVLIQGVTVLAPVEVPNTDGINPDSCTNIRIEDSYIVSGDDCIAVKSGIDQYGIKVAKPTKQLAIRRVTCIS PDSALVALGSEMSGGIQDVRIEDLTAINTQSAIRIKSAVGRGGYVKDIFARRLTFDGMDRAFWMSGNYKTHADEGFDPNALPEINNINYRDVVGQKVNVS GMLSGITKDPFTGICMSNVTLNLGPKAKELQWNCTDVAGTTSRVTPKPCDALPDKAGLDCPFPEDKLPIDGLVLQSCTTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48950			Pectin lyase-like superfamily ...		Lus10039279 [exp]	0	1
AT1G54460			TPX2 (targeting protein for Xk...		Lus10022003 [exp]	1.7	0.7647
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	11.3	0.7622
					Lus10007554 [exp]	16.1	0.7473
					Lus10018224 [exp]	20.2	0.7402
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	25.5	0.7351
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	28.3	0.7072
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10039906 [exp]	28.8	0.6813
					Lus10004849 [exp]	35.4	0.7076
AT1G65550			Xanthine/uracil permease famil...		Lus10036355 [exp]	36.0	0.7384
					Lus10011452 [exp]	36.6	0.7104

Compare expression of checked genes

Lus10039279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.