Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01540 85 / 9e-19 Protein kinase superfamily protein (.1.2) AT4G02630 85 / 1e-18 Protein kinase superfamily protein (.1) AT4G01330 81 / 4e-17 Protein kinase superfamily protein (.1.2) AT2G42960 79 / 1e-16 Protein kinase superfamily protein (.1) AT1G09440 76 / 1e-15 Protein kinase superfamily protein (.1) AT3G59110 76 / 2e-15 Protein kinase superfamily protein (.1) AT1G56720 76 / 2e-15 Protein kinase superfamily protein (.1.2.3) AT2G30940 75 / 3e-15 Protein kinase superfamily protein (.1.2) AT3G17420 73 / 1e-14 GPK1 glyoxysomal protein kinase 1 (.1) AT4G32710 69 / 3e-13 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024813 [exp] 83 / 6e-18 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 83 / 6e-18 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 79 / 1e-16 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10042324 [exp] 79 / 1e-16 AT4G34490 658 / 0.0 cyclase associated protein 1 (.1) Lus10001423 [exp] 79 / 2e-16 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10001055 [exp] 79 / 2e-16 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10012664 [exp] 78 / 2e-16 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10041593 [exp] 78 / 3e-16 AT4G01330 568 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 78 / 3e-16 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146000 [exp] 100 / 5e-24 AT1G01540 400 / 5e-136 Protein kinase superfamily protein (.1.2) Potri.014G088800 [exp] 89 / 4e-20 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G203300 [exp] 82 / 2e-17 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.002G059000 [exp] 81 / 3e-17 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.014G026100 [exp] 78 / 3e-16 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.004G154000 [exp] 78 / 3e-16 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.005G003300 [exp] 76 / 2e-15 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.005G139500 [exp] 76 / 2e-15 AT4G02630 477 / 2e-166 Protein kinase superfamily protein (.1) Potri.013G003700 [exp] 75 / 3e-15 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.009G115600 [exp] 73 / 1e-14 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10039280 pacid=23175632 polypeptide=Lus10039280 locus=Lus10039280.g ID=Lus10039280.BGIv1.0 annot-version=v1.0 ATGCAATACTCGGCGCCTTTCAAAACCACGCCCTTCTTCGGAATTAAACTATGGGTCCTAATCCTATCCCTAGCTTTGCTAATCGCCTGCCTCACAATCA TCTTCGCCGTTCGCTGCATCGTCGACCTCCACCGTCGCCGAATTACCAAACTAAACCCCAATTTATGTTCCCAACATGCGATCCCCTGCCCCGGAGGGTT CGCTGCTTCGTCCTCCCTCGACAGGAGGCTCTTGTCGAGCCAGCGTATTTCCGAGACGGACATGACGAACGTTGTTAACAGTAAGCAGACGGCAGAGTAT AATTATTCGAGGAATTACTGTCGTCAGGACGGCGGGATTGTGGGTCGTGACGACCTGGAATCCGGTTCCAGGCTGCAGTGTAATGTTCGGAAGGGGAGTG CTTTGAGTTTGAGTTCGAGGGAGATTGAAGCTGCCACCGGAGGGTTTGCTGACTGTAACAGAATTGGAATCGGAGACCACGGCGGCGTCAGTTACTGTGG CGTTTTGTTTAATAACACCAGAGTAGCCGTGGTTAAACTGCCTACTAAAAGAGAAGTTGATGGCGGAAATGGTTTAATAAGGCATGTCGGTAAGCATAAA AATCTTGTCCAATTGCGCTGGTACTGCATCAAAGGAGATCATAGATTGATTGTGACTGAATACTTGGATAGTATTGGCAATCTGCATGAATTGCTTCATG AACGCACACAACATGAAGTCAGCACTTTGACTTGGGACCTGAGGATGAACATTCTCCAAGGAGTAGCAAAAGGGTGA
AA sequence Show only first row Show all	>Lus10039280 pacid=23175632 polypeptide=Lus10039280 locus=Lus10039280.g ID=Lus10039280.BGIv1.0 annot-version=v1.0 MQYSAPFKTTPFFGIKLWVLILSLALLIACLTIIFAVRCIVDLHRRRITKLNPNLCSQHAIPCPGGFAASSSLDRRLLSSQRISETDMTNVVNSKQTAEY NYSRNYCRQDGGIVGRDDLESGSRLQCNVRKGSALSLSSREIEAATGGFADCNRIGIGDHGGVSYCGVLFNNTRVAVVKLPTKREVDGGNGLIRHVGKHK NLVQLRWYCIKGDHRLIVTEYLDSIGNLHELLHERTQHEVSTLTWDLRMNILQGVAKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01540			Protein kinase superfamily pro...		Lus10039280 [exp]	0	1

Compare expression of checked genes

Lus10039280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.