Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25740 185 / 4e-60 RNA binding Plectin/S10 domain-containing protein (.1.2) AT5G52650 184 / 5e-60 RNA binding Plectin/S10 domain-containing protein (.1) AT5G41520 174 / 6e-56 RNA binding Plectin/S10 domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038846 [exp] 201 / 2e-63 AT5G52660 292 / 2e-96 Homeodomain-like superfamily protein (.1.2) Lus10024669 [exp] 194 / 6e-60 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10032298 [exp] 193 / 1e-59 AT1G63910 260 / 2e-82 myb domain protein 103 (.1) Lus10014966 [exp] 174 / 2e-54 AT4G25740 216 / 5e-71 RNA binding Plectin/S10 domain-containing protein (.1.2) Lus10027519 [exp] 113 / 2e-32 AT4G25740 104 / 8e-30 RNA binding Plectin/S10 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G146700 [exp] 194 / 1e-63 AT4G25740 180 / 1e-58 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.013G027900 [exp] 192 / 5e-63 AT5G52650 179 / 8e-58 RNA binding Plectin/S10 domain-containing protein (.1) Potri.004G073500 [exp] 192 / 5e-63 AT4G25740 178 / 6e-58 RNA binding Plectin/S10 domain-containing protein (.1.2) Potri.005G040100 [exp] 192 / 6e-63 AT4G25740 177 / 2e-57 RNA binding Plectin/S10 domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF03501 [flax] [poplar] S10_plectin Plectin/S10 domain
Representative CDS sequence Show only first row Show all	>Lus10039282 pacid=23175469 polypeptide=Lus10039282 locus=Lus10039282.g ID=Lus10039282.BGIv1.0 annot-version=v1.0 ATGATTATCTCAGAGAAGAACAGGAGAGAAATCTCCAAGTACCTCTTCCAAGAGGGAGTGTGCTATGCAAAGAAGGACTTCAACCTTGCAAAGCACCCAG ACATCGATGTGCCCAACCTACAGGTGATTAAGCTGATGCAGAGCTTCAAATCCAAGGAATATGTCCGTGAGACATTCGCCTGGATGCACTACTATTGGTA TCTGACCAATGACGGGATTGAGTTCTTGAGGACTTACCTCAATCTCCCATCAGAGATTGTGCCCGCTACTCTGAAGAAATCTGCCAAGCCTGTTGGCCGA CCTATGGGAGGTCCACAAGGTGACCGGCCCAGGGGTCCTCCTGGTGACCGTCAAAGGTTTGGTGACCGTGATGGTTACCGTAGTGGTCCTCGTGAGGGAG GTTTCGGTGGTGGGAAGGAAGGTGCTCCAGCTGACTACCAGCCATCCTTCAGGGGGTCTGGAAGGGGTATGGGACGTGGTGGAGGAGGCTATGCCGGTGG TGCTCCAGCTCCAAGCAGCTCTGGATATGCTGAATGA
AA sequence Show only first row Show all	>Lus10039282 pacid=23175469 polypeptide=Lus10039282 locus=Lus10039282.g ID=Lus10039282.BGIv1.0 annot-version=v1.0 MIISEKNRREISKYLFQEGVCYAKKDFNLAKHPDIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKPVGR PMGGPQGDRPRGPPGDRQRFGDRDGYRSGPREGGFGGGKEGAPADYQPSFRGSGRGMGRGGGGYAGGAPAPSSSGYAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25740			RNA binding Plectin/S10 domain...		Lus10039282 [exp]	0	1
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10009322 [exp]	1.0	0.9367
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10008640 [exp]	2.8	0.8798
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10019881 [exp]	3.2	0.8840
AT4G15000			Ribosomal L27e protein family ...		Lus10010461 [exp]	4.6	0.8803
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10043158 [exp]	6.2	0.8504
AT3G02080			Ribosomal protein S19e family ...		Lus10030702 [exp]	6.7	0.8704
AT2G32060			Ribosomal protein L7Ae/L30e/S1...		Lus10021027 [exp]	9.5	0.8673
AT5G60670			Ribosomal protein L11 family p...		Lus10023186 [exp]	10.2	0.8628
AT2G29530		TIM10	Tim10/DDP family zinc finger p...		Lus10016453 [exp]	11.3	0.8612
AT5G39850			Ribosomal protein S4 (.1)		Lus10042193 [exp]	12.6	0.8476

Compare expression of checked genes

Lus10039282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.