Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01290 48 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027520 [exp] 818 / 0 ND 40 / 0.004 Lus10007916 [exp] 44 / 0.0004 AT4G01290 507 / 3e-163 unknown protein Lus10036389 [exp] 43 / 0.0009 AT4G01290 483 / 4e-154 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G073400 [exp] 84 / 1e-16 AT4G01290 60 / 5e-09 unknown protein Potri.002G163000 [exp] 50 / 4e-06 AT4G01290 499 / 1e-159 unknown protein Potri.014G089200 [exp] 44 / 0.0003 AT4G01290 501 / 1e-160 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039283 pacid=23175596 polypeptide=Lus10039283 locus=Lus10039283.g ID=Lus10039283.BGIv1.0 annot-version=v1.0 ATGATGAGCGCGGGAGCTCCGTCGACTCTGAGCTTAGTGGCGAAATCAAGCTCAGATGATCCTGCGCCATGCTTCCGCAACGGCTCGAAGTTCTCTTACA CATTGGATTTTCTGTTGTCCATCGGAAAGTCGGATAGATGCCAGAGGTTGCCTTGTGACTTGGATTCTACTGTATTGTGGGACAGTGGACTAAATGAGGA ACCGCAACAAATTCCGCCTCCGCCGCTCCCCTTTTTTTCTCATTCTTCGAAATGGGATTCTTCGAAATGGGATTCTTCGAAATGGGATTCCAACTATGTA CGAAGCCCTCTGAAGAGTAATCCTCAAAGTGGAATTTTGGGGAAAGGTGCTCTACTTCGAACACCTTGTTTACCAACATTTTCTACTGTTCCAAAGACTG AGGAGACTACTAGCTGCCATCTTCTAGCCCGAAGTGTTGCACCATATCGACCACCACACCTCTACAAGCCGAATCTTCAACCAGAAATCGATGATGCTGG CGGGAAAGCATTTGGTACCTCAGAGGTCAATGGAGCGGTGAAGACTGAAGAGGAAAGACAGAAAAAAGCATCTGAATTGTTATGGAAAGAACAGCCAGCT ATTCTAGACACTGAAATGAATGCTTCAGCTGTTCCGAAAGAAAATCTTGACCCAAGTAACAGAACATGCACAGCAGATTTTTTCAAGAAATATAGTACTC CTGTTCAGGAAAGTGGCAATCCGGAGCAAATCAAGAATTATGACCTCAAAGTTGATCAGACCACCAAGCTATCGTCTCCTGAGATTCTACCTTGGTTTAA GGAAGGTACAGAAGGAAAGCCAACAGATCAAAACACAGAGCTGAACAAACAACAGTTGACAAATACTCGTGATGGAAGTAATGATGGGATAAGAGAGGTT GTTAAATCATCCACTTATCTTTCCGCTGCCGAGGAAGTCTTTAAGCAGCTTCGTGAATGGGATAAATCAACTAAAGAGAGGGAAGAGAGTTCAGGCATTA GCCACGATGCTGGATCGCACAACCTTCTTCATCTGTTAGAGGAAAGTACATGCGTTGAAAGCCTGGTTGCAGCGTTCTGCATCTGTGAAGAAGAAGAAGA AGAAGAAGAAGAAGAAGAAACAGACAGCAGTGAAGATACGGCAACTAGACTATGTTCTCCAGAAGAGTGTCAGTCCACGTTTGATCTTCCTGCGGAAGCT GATGAACCCCCATTGGACATCAATCTCAGAGGAGCTATCTCTACTTCTTCCGAAATGAGACTAGAAATCTCAACTGAAGAGGGGCCTCCTGTTATCCCAG TTGCAAATGCAAGTGACGAAATCTGTTGGCCGGATGAAGACGCTTTGATTACCGTGAAAGACTTCATGTGCCCTAAAGCTGTTAACGGGGTCTATACTGA AGTTGGTCTCCAAGACTCTCCAAGGCCAGTTGATTTCAGAGAATGTGACAAGACATCAAATCCAACGGCTGTAAGAAACGCGGAGAAGAAGACACCTCCG ACCACCCCTGCTTCAAAGACGACAAAATCAAACAGCATTGTAAAGAAACACAGTCCCCCAAGAGTGTTTCCTCCATATCCTTCGGTTCCACGGTTCAACA ATGCCATCAGGACTCCTGCTCCTCTTCCACCTACGCCTCCCAGTCTATTTGGAATGCCACCGTTATTTCCGTTTCCTGGGAATCAGACGGCTCCCTACTC GCAATTTGGTCTTCCTCCTCCCTTCCCATTTCCACACCAGATGTACGGTAACTTGTCTGCCAAGCGAGATCTCAGCGCTGGTGATTTGGGAATTTTGAAC AACATGCCCTTTGAGGAGGGAAAACAGCTTGGCGGGGGGCATTTGGGATGGCCTTGGTTCGGCTACAACGCTTGA
AA sequence Show only first row Show all	>Lus10039283 pacid=23175596 polypeptide=Lus10039283 locus=Lus10039283.g ID=Lus10039283.BGIv1.0 annot-version=v1.0 MMSAGAPSTLSLVAKSSSDDPAPCFRNGSKFSYTLDFLLSIGKSDRCQRLPCDLDSTVLWDSGLNEEPQQIPPPPLPFFSHSSKWDSSKWDSSKWDSNYV RSPLKSNPQSGILGKGALLRTPCLPTFSTVPKTEETTSCHLLARSVAPYRPPHLYKPNLQPEIDDAGGKAFGTSEVNGAVKTEEERQKKASELLWKEQPA ILDTEMNASAVPKENLDPSNRTCTADFFKKYSTPVQESGNPEQIKNYDLKVDQTTKLSSPEILPWFKEGTEGKPTDQNTELNKQQLTNTRDGSNDGIREV VKSSTYLSAAEEVFKQLREWDKSTKEREESSGISHDAGSHNLLHLLEESTCVESLVAAFCICEEEEEEEEEEETDSSEDTATRLCSPEECQSTFDLPAEA DEPPLDINLRGAISTSSEMRLEISTEEGPPVIPVANASDEICWPDEDALITVKDFMCPKAVNGVYTEVGLQDSPRPVDFRECDKTSNPTAVRNAEKKTPP TTPASKTTKSNSIVKKHSPPRVFPPYPSVPRFNNAIRTPAPLPPTPPSLFGMPPLFPFPGNQTAPYSQFGLPPPFPFPHQMYGNLSAKRDLSAGDLGILN NMPFEEGKQLGGGHLGWPWFGYNA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01290			unknown protein		Lus10039283 [exp]	0	1
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	1.4	0.9882
					Lus10016534 [exp]	2.4	0.9879
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	3.5	0.9819
					Lus10007549 [exp]	6.9	0.9822
AT1G44760			Adenine nucleotide alpha hydro...		Lus10042701 [exp]	7.1	0.9752
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	7.7	0.9776
AT5G66440			unknown protein		Lus10025994 [exp]	8.8	0.9763
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	12.4	0.9777
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	12.6	0.9758
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	12.6	0.9712

Compare expression of checked genes

Lus10039283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.