Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01490 90 / 2e-21 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G52740 73 / 4e-16 Copper transport protein family (.1) AT5G52760 67 / 7e-14 Copper transport protein family (.1) AT5G52750 60 / 5e-11 Heavy metal transport/detoxification superfamily protein (.1) AT5G52670 55 / 1e-09 Copper transport protein family (.1) AT5G52730 56 / 2e-09 Copper transport protein family (.1) AT1G63950 55 / 2e-09 Heavy metal transport/detoxification superfamily protein (.1) AT1G55790 52 / 3e-08 Domain of unknown function (DUF2431) (.1), Domain of unknown function (DUF2431) (.2) AT5G23760 49 / 1e-07 Copper transport protein family (.1) AT5G52770 49 / 2e-07 Copper transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027524 [exp] 380 / 1e-132 AT1G01490 100 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027523 [exp] 153 / 2e-46 AT1G01490 77 / 3e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10027522 [exp] 122 / 1e-34 AT1G01490 83 / 7e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10014967 [exp] 124 / 2e-34 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039285 [exp] 112 / 1e-30 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10036395 [exp] 91 / 9e-22 AT1G01490 131 / 1e-38 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007911 [exp] 89 / 4e-21 AT1G01490 128 / 2e-37 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028762 [exp] 71 / 5e-15 AT1G01490 74 / 3e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10007455 [exp] 75 / 8e-15 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G099500 [exp] 103 / 2e-27 AT1G01490 105 / 2e-29 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073000 [exp] 98 / 2e-25 AT1G01490 96 / 5e-26 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.003G132200 [exp] 98 / 7e-25 AT1G01490 102 / 2e-28 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147500 [exp] 96 / 3e-24 AT1G01490 91 / 4e-24 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G073100 [exp] 92 / 4e-23 AT1G01490 82 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.002G163400 [exp] 92 / 1e-22 AT1G01490 110 / 3e-31 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147400 [exp] 86 / 1e-20 AT1G01490 74 / 2e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.014G089700 [exp] 86 / 5e-20 AT1G01490 115 / 9e-33 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147000 [exp] 79 / 6e-18 AT1G01490 61 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.017G147200 [exp] 77 / 3e-17 AT1G01490 64 / 1e-13 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10039286 pacid=23175540 polypeptide=Lus10039286 locus=Lus10039286.g ID=Lus10039286.BGIv1.0 annot-version=v1.0 ATGAAGCAAGTGGTGCTTAAGCTGGATCTACACGGCGACAGAGACAAGCAGAGAGCACTGAAGAGAGTCACGGCCATCTCCGGCGTCGACTCGGTCTCCA TGGACATGAAGGAGAAGAAGCTGACTGTCACCGGAGACTTTGACCCGGTCAAAGTAGTGAGCAAGCTGAGGAAGCTTTGTCACACTGACATAGTCTCCGT CGGGGAGCCCAAGAAGCCGGAGGATGGAGGAAAAGACAAGAATACCCCTGAGCCGCCAGTGGTACCACCGTACTATTATAATCCTTATCAGAACAGTTAC CAGCATAATTACAATTACGCCCCTTATCCCGCCAGGACGTACAGCTACAACGCGCGTCATGGTCACGTGGTTGGCGATGACCCTAATGCCTGTAAAGTAG TACTGAAATTGGATATGCTCGACGAGAAGGACAAGCAGAAGGCGATGAAGATCGTCTCCGGTCTTCCAGGGGTGGACTCGATTGCGGTTGATTTGAAAGA GAGCAAGCTGACAGTGACTGGGAAAATCGACCCGGTTGAAGTGGTGACAAAGCTGAGGAAGAGCTTCCGTAGGGCGGAGATCGTCACGGTAGGTCCGGCG ACAACGAAAGAAGGGGAGAAGAAAGGAGGTGAGAATCAGAAGAAAGCAGAGGATCAAGGCGGGAAGATCGGTAAAGGCGATAACAACCAGCAGCAAGGGC AAGGGCAGGGTAATAACACGAATCAGAAGAAAGATTCGTCTGGTTCTGGTGGTGTGTCGAAGAAGGAGGATTCGTATGGGCATGTTGTGAATTCTGTTTA CAGATCCCCTTATTATCATTACCCTCAGCCTAATCAGATGGCTGGTTACTACTACGCCCGGAGTGCAGAGGAAGATCCGAATGCTTGCGTCATTTCTTGA
AA sequence Show only first row Show all	>Lus10039286 pacid=23175540 polypeptide=Lus10039286 locus=Lus10039286.g ID=Lus10039286.BGIv1.0 annot-version=v1.0 MKQVVLKLDLHGDRDKQRALKRVTAISGVDSVSMDMKEKKLTVTGDFDPVKVVSKLRKLCHTDIVSVGEPKKPEDGGKDKNTPEPPVVPPYYYNPYQNSY QHNYNYAPYPARTYSYNARHGHVVGDDPNACKVVLKLDMLDEKDKQKAMKIVSGLPGVDSIAVDLKESKLTVTGKIDPVEVVTKLRKSFRRAEIVTVGPA TTKEGEKKGGENQKKAEDQGGKIGKGDNNQQQGQGQGNNTNQKKDSSGSGGVSKKEDSYGHVVNSVYRSPYYHYPQPNQMAGYYYARSAEEDPNACVIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01490			Heavy metal transport/detoxifi...		Lus10039286 [exp]	0	1
					Lus10021280 [exp]	6.6	0.8967
AT4G35110			Arabidopsis phospholipase-like...		Lus10007582 [exp]	13.3	0.9311
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019832 [exp]	14.9	0.9333
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10030040 [exp]	21.2	0.9160
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Lus10036086 [exp]	28.2	0.9222
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	30.3	0.9175
AT1G27180			disease resistance protein (TI...		Lus10017143 [exp]	34.6	0.8927
AT4G30600			signal recognition particle re...		Lus10035066 [exp]	40.5	0.9120
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	43.2	0.9121
AT2G31570		ATGPX2	glutathione peroxidase 2 (.1)		Lus10027021 [exp]	44.5	0.9044

Compare expression of checked genes

Lus10039286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.