Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70780 100 / 2e-27 unknown protein AT1G23150 92 / 3e-24 unknown protein AT5G37730 81 / 2e-19 unknown protein AT4G22758 56 / 6e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027525 [exp] 273 / 2e-95 AT1G70780 104 / 3e-29 unknown protein Lus10035084 [exp] 102 / 2e-28 AT1G70780 171 / 7e-56 unknown protein Lus10031920 [exp] 99 / 7e-27 AT1G70780 172 / 4e-56 unknown protein Lus10034416 [exp] 95 / 2e-25 AT1G70780 168 / 8e-55 unknown protein Lus10019143 [exp] 91 / 1e-23 AT1G70780 167 / 4e-54 unknown protein Lus10017628 [exp] 85 / 2e-21 AT5G37730 102 / 3e-28 unknown protein Lus10009131 [exp] 83 / 1e-20 AT1G70780 92 / 1e-24 unknown protein Lus10000386 [exp] 52 / 2e-08 AT4G22758 139 / 2e-40 unknown protein Lus10020544 [exp] 45 / 3e-06 AT2G27830 181 / 3e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131600 [exp] 108 / 9e-31 AT1G70780 183 / 2e-60 unknown protein Potri.010G110800 [exp] 107 / 2e-30 AT1G70780 188 / 9e-63 unknown protein Potri.017G125300 [exp] 101 / 5e-28 AT1G70780 109 / 2e-31 unknown protein Potri.004G089700 [exp] 96 / 1e-25 AT5G37730 108 / 1e-30 unknown protein Potri.003G116200 [exp] 52 / 3e-08 AT4G22758 131 / 5e-37 unknown protein Potri.004G188600 [exp] 48 / 4e-07 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 45 / 6e-06 AT2G27830 183 / 6e-59 unknown protein Potri.001G116200 [exp] 45 / 7e-06 AT4G22758 117 / 5e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039287 pacid=23175537 polypeptide=Lus10039287 locus=Lus10039287.g ID=Lus10039287.BGIv1.0 annot-version=v1.0 ATGGAGCAAACGACGATCAATGGCGGCGGCCGAGTGGAGGAGCTGAAGAAGAAAGTGAATGAGAGAGTGACGTCATCACGGGACAAGATCAAGAACCGGA AGAGAGCGTTACTCCTCAACGCTAACAAGAAGAAGAGCAGGAGGTTCTTGATCAGTGTCGCGGTCCGGGGCAGCGTAGGGCCGATCAGGTTCGTGGCGAA CCAGAACGACACCGTTACGGTCGTTATACGAGCTTGCCTCCAGCGGTATGCTCGAGAAGGCCGGCTTCCGGCCGTGGGGAGGTTCGACGTCCATGACTTC CTTCTCTACTGCCCACACGTTGCTTCCGAAGCGCTGAGTCCAGGGGAAGCAATTGGAGAATGTGGCGGGAGATATTTCGTGCTGTCCAAGAAACAGGGGC CGGCGGCGGCGGCGGTGATTGGGAGAGCTGAAATCGTGGGTGGCAATGGTTGTAAAGTGTGGCTGTTCAAATCATTTTTTGTTTAA
AA sequence Show only first row Show all	>Lus10039287 pacid=23175537 polypeptide=Lus10039287 locus=Lus10039287.g ID=Lus10039287.BGIv1.0 annot-version=v1.0 MEQTTINGGGRVEELKKKVNERVTSSRDKIKNRKRALLLNANKKKSRRFLISVAVRGSVGPIRFVANQNDTVTVVIRACLQRYAREGRLPAVGRFDVHDF LLYCPHVASEALSPGEAIGECGGRYFVLSKKQGPAAAAVIGRAEIVGGNGCKVWLFKSFFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70780			unknown protein		Lus10039287 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	1.4	1.0000
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	2.0	1.0000
					Lus10027606 [exp]	3.5	0.9842
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	4.0	0.9713
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	4.5	0.9279
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10012859 [exp]	4.6	0.9067
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	4.9	0.9262
AT5G24130			unknown protein		Lus10001061 [exp]	5.7	0.8848
AT4G39830			Cupredoxin superfamily protein...		Lus10000871 [exp]	6.0	0.8337
AT1G30710			FAD-binding Berberine family p...		Lus10023369 [exp]	6.0	0.8552

Compare expression of checked genes

Lus10039287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.