Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52790 417 / 4e-142 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 382 / 5e-128 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 320 / 2e-105 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 315 / 2e-103 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14230 295 / 1e-94 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 284 / 2e-90 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 280 / 7e-89 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027528 [exp] 596 / 0 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 564 / 0 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027527 [exp] 363 / 2e-123 AT5G52790 302 / 2e-99 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 351 / 3e-116 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 337 / 1e-111 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 303 / 1e-100 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10020494 [exp] 306 / 3e-100 AT2G14520 538 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 289 / 2e-92 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 287 / 3e-92 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G147900 [exp] 475 / 2e-164 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 369 / 3e-122 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 342 / 1e-113 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 333 / 3e-110 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 331 / 1e-109 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.010G030200 [exp] 297 / 2e-95 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.008G202100 [exp] 290 / 1e-92 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.002G260401 [exp] 54 / 4e-09 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039288 pacid=23175706 polypeptide=Lus10039288 locus=Lus10039288.g ID=Lus10039288.BGIv1.0 annot-version=v1.0 ATGGCAGATGATGTACCATGCTGTGAGCCAATGTTCTGGGGATATCTGGTAGTGTGCATAGCTCTGGTTGCCTTTGCTGGTCTAATGTCTGGCCTTACCT TAGGCCTCATGTCTCTCAGCTTGGTTGATCTTGAAGTCCTTATCAAAGCCGGTCGACCTGATGACCGCAAAAATGCAGCAAAGATACTACCAATTGTAAA AAGGCAGCATCTTCTGTTGTGTACACTTCTCATTGGCAATGCACTGGCTATGGAGGCACTTCCGATCTTCCTGGACTCAATTCTTCCTCCTTGGGCAGCC ATTCTCATATCAGTCACTCTCATTCTTGCATTCGGTGAGATTATACCGCAATCAATTTGTTCAAGATATGGACTCAGTGTCGGTGCAAAACTAACTCCTA TCGTCAGAGTGATTGTCATACTCCTCTTTCCAGTTGCTTACCCCATTAGTAAGCTGCTTGACTGGGTTCTTGGGAAGAAGCATTCGACACTCCTGCGACG AGCAGAGCTCCGAACCTTGGTGGACTTCCATGGAAATGAGTCGGGGAGAGGAGGAGAGCTGACACATGATGAGACAACAATCATAACAGGAGCTTTGGAT ATGACACAGAAGACTGCTAAAGATGCCATGACTCCCACTTCCAAGATCTTCTCACTTGACATCAATTCTAAGCTTGATGAGGTAGAAGATCACCTTCCTT TGTATGACATACTGAACCAATTCCAGAAAGGCCAGAGTCACATGGCCATTGTTGTCAAGCAGAAGCAAGATCCTAATAACAAGTCTCCGAATGTCGAAAT CCCGAAAGCAAAACCCGGAATCGTAGAGATCAACATTGATCCCAATTCAAAACCAGGAGGCATAGAGAAGAAAGGAAATGGAGGCTGTTTGAATATGATC CAAGATAGACCCATTATTGGTAAGGAAGATTTGGAGACGATCTCGTTCTCTGACATAGAGGTCATCGGCATCATAACTCTGGAAGATGTCATGGAAGAAC TTCTCCAGGAGGAGATTCTGGACGAGACTGACAAATACGACGACGTTTACAACCGGATTAGGATAAATATGCTGTCTTCTGAGAGATCACCGACGGAATC GCCTGGTGGAACGGCGTCGTCAGGTTCTCAGTTTCAACGGCGGCACTCCCCTGCACCGTACCAGTTGCAGAGTCCGGTGATGTCGCCGATTGTGCCGTAC GTTGTTCGCTCACCGTTGATGAGAATTCCTCTGTCAGTTTCTCCGGCAAAGTCTCATCCGAATTCTCCAGCTGCGATCGTTGCCCACACTCCTGATCAGG GTCTTTCCCCATCATCTCACCGGGTAAAGTCCCAAATCATATTGAACTCACCAAAGATTCTGAATTCCGAGTTCGTAACTTTCGGTTTTTTTGGTGGCAG GTTTCGAGGAAACCATACAACAAGCTGA
AA sequence Show only first row Show all	>Lus10039288 pacid=23175706 polypeptide=Lus10039288 locus=Lus10039288.g ID=Lus10039288.BGIv1.0 annot-version=v1.0 MADDVPCCEPMFWGYLVVCIALVAFAGLMSGLTLGLMSLSLVDLEVLIKAGRPDDRKNAAKILPIVKRQHLLLCTLLIGNALAMEALPIFLDSILPPWAA ILISVTLILAFGEIIPQSICSRYGLSVGAKLTPIVRVIVILLFPVAYPISKLLDWVLGKKHSTLLRRAELRTLVDFHGNESGRGGELTHDETTIITGALD MTQKTAKDAMTPTSKIFSLDINSKLDEVEDHLPLYDILNQFQKGQSHMAIVVKQKQDPNNKSPNVEIPKAKPGIVEINIDPNSKPGGIEKKGNGGCLNMI QDRPIIGKEDLETISFSDIEVIGIITLEDVMEELLQEEILDETDKYDDVYNRIRINMLSSERSPTESPGGTASSGSQFQRRHSPAPYQLQSPVMSPIVPY VVRSPLMRIPLSVSPAKSHPNSPAAIVAHTPDQGLSPSSHRVKSQIILNSPKILNSEFVTFGFFGGRFRGNHTTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52790			CBS domain-containing protein ...		Lus10039288 [exp]	0	1
					Lus10024633 [exp]	13.6	0.7548
AT1G21890			nodulin MtN21 /EamA-like trans...		Lus10021201 [exp]	24.0	0.8212
AT5G05220			unknown protein		Lus10034248 [exp]	36.4	0.7878
AT2G20820			unknown protein		Lus10037883 [exp]	38.3	0.7944
AT2G15220			Plant basic secretory protein ...		Lus10026586 [exp]	49.0	0.7556
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10016429 [exp]	55.7	0.7378
					Lus10000456 [exp]	77.1	0.7315
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029318 [exp]	83.7	0.7685
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10009017 [exp]	90.2	0.7588
AT4G38960	CO		B-box type zinc finger family ...		Lus10035472 [exp]	91.2	0.7576

Compare expression of checked genes

Lus10039288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.