Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52790 486 / 3e-169 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G47330 438 / 7e-150 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 394 / 7e-134 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT2G14520 389 / 5e-132 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 349 / 2e-115 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 348 / 6e-115 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT4G14230 343 / 5e-113 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT3G13070 54 / 2e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT1G55930 52 / 6e-07 CBS domain-containing protein / transporter associated domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027528 [exp] 834 / 0 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039288 [exp] 524 / 0 AT5G52790 449 / 1e-154 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 429 / 2e-146 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10005259 [exp] 417 / 5e-143 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027527 [exp] 372 / 6e-127 AT5G52790 302 / 2e-99 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 367 / 1e-125 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 358 / 2e-119 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10034024 [exp] 357 / 9e-119 AT4G14230 675 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 342 / 7e-113 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G147900 [exp] 555 / 0 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G288000 [exp] 412 / 5e-141 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G196900 [exp] 417 / 6e-141 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 409 / 7e-140 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 403 / 2e-137 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.010G030200 [exp] 352 / 9e-117 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.008G202100 [exp] 352 / 1e-116 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.002G260401 [exp] 57 / 3e-10 AT1G47330 58 / 3e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.001G362100 [exp] 55 / 8e-08 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10039289 pacid=23175645 polypeptide=Lus10039289 locus=Lus10039289.g ID=Lus10039289.BGIv1.0 annot-version=v1.0 ATGGCAGATGATGTACCATGCTGTGAGCCAATGTTCTGGGGATATCTGGTAGTGTGCATAGCTCTGGTTGCCTTTGCTGGTCTAATGTCTGGCCTTACCT TAGGCCTCATGTCTCTCAGCTTGGTTGATCTTGAAGTCCTTATCAAAGCCGGTCGACCTGATGACCGCAAAAATGCAGCAAAGATACTACCAATTGTAAA AAGGCAGCATCTTCTGTTGTGTACACTTCTCATTGGCAATGCAATGGCTATGGAGGCACTGCCAATCTTCCTGGACTCAATTCTTCCTCCATGGGCAGCC ATTCTTATATCAGTAACTCTCATTCTTGCCTTTGGTGAGATTATACCACAGTCAATTTGTTCAAGGTATGGACTGAGTGTTGGTGCAAAGATGTCTCCTG TGGTCAAAGTGATTGTCATTATCCTCTTCCCAATTGCTTATCCCATCAGTAAGGTGCTTGATTGGGTTCTTGGGAAGAGGCATTCAGCACTCCTGCGGCG AGCAGAGCTCAGAATCTTGGTGGACTTGCATGGAAACGAGGCAGGGAAAGGAGGAGAGCTGACACACGATGAGACAACAATCATAACAGGAGCTTTGGAT ATGACACAAAAGACTGCAAAAGATGCTATGACTCCCACTTCCAAGATCTTCTCTCTTGACATTAATTCTAAGCTTGATGAGAAAACCATGGAACTCATAA TTAGCCAAGGACACAGCCGTGTACCTATCTACATGGGCAGCCCTTACAACATTGTTGGCCTTATTTTGGTGAAGAATTTGATCAAGTGTCGCTTCGAGGA CGAAACGCCTATCAGGGAACTTACTATTCGAAGGATCCCAAGGGTACAAGATCAAGTTCCTCTGTATGATATACTAAACCAATTCCAGAAGGGTCACAGC CACATGGCTATAGTCGTCAAGCAAAAGGAAGACCCTAACAAACCCCAAGTCGTAGAGATTAACATCGATCCCAGTCCGAAACCTAGAGATCATTCAGAGA AGAAAGGAAATCGTCATTATTCCAGTAGTATACTGAGGGAGCAGAGTGGAAGCGGAGACTATTTGAATACGATCCGGGAATTCCATGATAAGCCCATTTG TAAAGAAGATTTGGAGACGATTGCGTTCTCCGATGTAGAGGTGGTGGGAATCATAACTCTGGAGGATGTCATTGAAGAACTTCTTCAGGAAGAGATTCTG GACGAGACTGACGAATACGTCGACGTTTACAACAGGATTAGGATCAATATGCTGCCGTCGCCGATGACTTCGTCGCTTGGAACGCCGTTAGCTTCTCCGT GCCAGATGCAGAGTAGTCCGGTTGTACTGTCTCCGTATAACATTAATGTGCTGCGTTCGCCGATTCCAGCGCCGTACCTTGTTCGTTCTCCGTTGATGAA GCCTTCTCTTCCGAATTCTCCCAGTGCGACGACGGCGTATGAGAAGCTGAGGAAACCTGACGAGTTATAG
AA sequence Show only first row Show all	>Lus10039289 pacid=23175645 polypeptide=Lus10039289 locus=Lus10039289.g ID=Lus10039289.BGIv1.0 annot-version=v1.0 MADDVPCCEPMFWGYLVVCIALVAFAGLMSGLTLGLMSLSLVDLEVLIKAGRPDDRKNAAKILPIVKRQHLLLCTLLIGNAMAMEALPIFLDSILPPWAA ILISVTLILAFGEIIPQSICSRYGLSVGAKMSPVVKVIVIILFPIAYPISKVLDWVLGKRHSALLRRAELRILVDLHGNEAGKGGELTHDETTIITGALD MTQKTAKDAMTPTSKIFSLDINSKLDEKTMELIISQGHSRVPIYMGSPYNIVGLILVKNLIKCRFEDETPIRELTIRRIPRVQDQVPLYDILNQFQKGHS HMAIVVKQKEDPNKPQVVEINIDPSPKPRDHSEKKGNRHYSSSILREQSGSGDYLNTIREFHDKPICKEDLETIAFSDVEVVGIITLEDVIEELLQEEIL DETDEYVDVYNRIRINMLPSPMTSSLGTPLASPCQMQSSPVVLSPYNINVLRSPIPAPYLVRSPLMKPSLPNSPSATTAYEKLRKPDEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52790			CBS domain-containing protein ...		Lus10039289 [exp]	0	1
AT1G14190			Glucose-methanol-choline (GMC)...		Lus10032346 [exp]	9.8	0.8844
AT5G03890			unknown protein		Lus10015117 [exp]	11.3	0.9005
AT3G05640			Protein phosphatase 2C family ...		Lus10037709 [exp]	20.1	0.8836
AT5G42785			unknown protein		Lus10002541 [exp]	22.8	0.8708
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10005635 [exp]	25.8	0.8472
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	29.0	0.8761
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	31.5	0.8667
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	32.7	0.8720
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Lus10017609 [exp]	33.0	0.8650
AT2G37530			unknown protein		Lus10025320 [exp]	34.5	0.8432

Compare expression of checked genes

Lus10039289 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.