Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52810 268 / 3e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027529 [exp] 427 / 1e-150 AT5G52810 364 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043176 [exp] 135 / 1e-37 AT5G52810 153 / 1e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G072500 [exp] 296 / 2e-99 AT5G52810 389 / 6e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02423 [flax] [poplar] OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family
Representative CDS sequence Show only first row Show all	>Lus10039290 pacid=23175664 polypeptide=Lus10039290 locus=Lus10039290.g ID=Lus10039290.BGIv1.0 annot-version=v1.0 ATGAATCGGGCGTCGATTCAACATCTAATGAATCCACGCCGATTCACTCCACTCAACGCTAACCCACGCCGCCTTAATCAACCACTTCCACACCTCTCTC CCCACCGTCTCCCCTACCACCCTCCAAACCCCAATCCGCCAAAGCTACGCCGTTTCACCGACCTCCTCCCTCCTCCTAATGCCTTCATGGTCCTCCATGC CTTCCTTACCTTACATCGCGTCAAGCTCGTCACCTACTTCCCTCAAAACTCCCCCGGAATCCACGCCTCCAACGTCCTGTTCAGCTCCTCCACCGGCCAA ACCCTAGCCACCTTAGACGGCACCGTTTTAACCCTCTACCGAACCTCTTCCATTTCCGGCCTAGCCTCCAAGCTCCTCTCCAGACCCGACGCCGCCATGC TCGTCATGGTCGGGGCCGGCGCGCTGGCTCCGCATCTGATCAGAGCACACCTCGCCGCCAGACCTGGATTGAAAGAAGTCATCATCTGGAACCGAACCAG GAAGAACGCCGTCAAATTGGCCGAGAAATTGACAGACGAATTAGGTCAAAATGGGGACTTGGAGTTTAGATGTTGTGATGATGAATTGGATGAGGTGGTG GGATTGGGGGATATAGTTTGTTGCGCGACGAATTCGGAATCGGCATTGGTGAAGGGGGAGAAGTTGAAGAGAGGGGCGCATTTGGATTTGGTGGGATCGT TCAGGGAGGAGATGAAGGAGTGCGACGACGAAGCGTTGAGGAGAGCTGCGGCGGTGGTGGAGGCTGGGGAAATCGTGGGTGGGTTGGGGAGAGGTGTGAT TGTGAAGAAAGAAGTTGGGTTGTTGGTGGATTTGATTAGTGGGGTGAAAGGTGGGAGGAAGGATGAGGATGAGATTACTGTGTTCAAGTCTGTGGGTTCT GGTGTTGTTGATATGCTTGCTGCTCAGTTTGTCTATGAAAATTGGGGGAAGAAGAAGAAGATTGCTAGAGACTTTGACAGTGTTAATCTAGAGTAG
AA sequence Show only first row Show all	>Lus10039290 pacid=23175664 polypeptide=Lus10039290 locus=Lus10039290.g ID=Lus10039290.BGIv1.0 annot-version=v1.0 MNRASIQHLMNPRRFTPLNANPRRLNQPLPHLSPHRLPYHPPNPNPPKLRRFTDLLPPPNAFMVLHAFLTLHRVKLVTYFPQNSPGIHASNVLFSSSTGQ TLATLDGTVLTLYRTSSISGLASKLLSRPDAAMLVMVGAGALAPHLIRAHLAARPGLKEVIIWNRTRKNAVKLAEKLTDELGQNGDLEFRCCDDELDEVV GLGDIVCCATNSESALVKGEKLKRGAHLDLVGSFREEMKECDDEALRRAAAVVEAGEIVGGLGRGVIVKKEVGLLVDLISGVKGGRKDEDEITVFKSVGS GVVDMLAAQFVYENWGKKKKIARDFDSVNLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10039290 [exp]	0	1
AT5G20130			unknown protein		Lus10038580 [exp]	5.1	0.8084
AT5G62200			Embryo-specific protein 3, (AT...		Lus10027387 [exp]	10.6	0.8335
AT2G19460			Protein of unknown function (D...		Lus10027629 [exp]	15.9	0.8520
AT1G56423			unknown protein		Lus10031415 [exp]	17.5	0.8294
AT3G09010			Protein kinase superfamily pro...		Lus10011193 [exp]	24.7	0.8177
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10005610 [exp]	31.4	0.8246
AT5G18610			Protein kinase superfamily pro...		Lus10033966 [exp]	32.0	0.8202
AT3G11810			unknown protein		Lus10036797 [exp]	34.6	0.8111
AT3G19895			RING/U-box superfamily protein...		Lus10034201 [exp]	35.1	0.7725
AT4G08580			microfibrillar-associated prot...		Lus10020319 [exp]	36.7	0.8144

Compare expression of checked genes

Lus10039290 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.