Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49140 385 / 2e-129 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G24060 372 / 1e-124 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) AT3G59300 184 / 2e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027532 [exp] 887 / 0 AT5G24060 402 / 4e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10014952 [exp] 451 / 1e-155 AT5G24060 324 / 2e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Lus10038836 [exp] 269 / 3e-85 AT3G49140 275 / 5e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148600 [exp] 502 / 2e-175 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G072400 [exp] 490 / 1e-170 AT5G24060 377 / 1e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2) Potri.014G151700 [exp] 172 / 4e-48 AT3G59300 523 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G230700 [exp] 163 / 1e-44 AT3G59300 542 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039291 pacid=23175561 polypeptide=Lus10039291 locus=Lus10039291.g ID=Lus10039291.BGIv1.0 annot-version=v1.0 ATGATGATGTTGATGATGGTTGAGTCAGCGACGGCCTCCCGCTTCAACGCCGGCGCTACTTTCTGCTCCTCCGCAGCTCCCTTATCTAAGTATCGTGGAG TGGGAAGCTTGGAGGAGTTAAGCAGAGTGAGCGCGGCCACTCGCCGGCAGCTACGCACGGCTAGCTTCGATCTACCGTGGAAGAAATCCCATATTCCAAG AGCTAGTTCTATATCAAAGAGGAGTGTACTGCTAAATAGTACAATTCGAGCTTCTGCAGGACAATTGTCGTCCGGTTCAGATCCTCCTGAGCAGAACGGT AAAGCACAATATCATCCATTCGAAGAGATTTCGGGTTCGGCCTCAAAGGGTATTGGAGATGCCAGACTTACGGCTCAAGAGACTTGTAGGACCATTGTTG AGGTGAATTGCAAAGCTACTTTGATGTTGAGCAACTTGTTCGATGAAGAAATTCACGAGAACGTCATGTGGCCGGACATGTCATATGTGACTGATGAATA TGGAAATATCTATTTTCAAGTGAAGAATGATGAAGACATTTTGCAGAGTCTTACTTCAGAAAATAACTATGTGCAAGCTATTATAGGCTTTGATTCAGAA GATATGGTCAGTGAAATGGAGCTACTAGAAAATACTGACATTGGATTTGGAATTGAGGAGTTCGACGAAGAAGATAGTGATGCCGAAGAAGACAGTGACG ATGACGACTATGATGAGGACATAAAAGCTATCCTTGAAGAAGACTCTGATGACGATGAGGATGATGATGATGATGTTGGAGACTGGGCAAATTTGGAAAC CATGGATTCTTCTCATCCAATGTATTTTGCCAAAAGACTGAGTCGGGCTGCTTCAGATGATCCTATAGATTTCATGAAGCAACCGCCAACTGGTTTGGCC ATACAAGGAATCCTCAGACCTGCATTTGGTGAAGAACACACTGACATCAAGAGGCATATGTCTGGCAATAAGTCCAAAACACAAGATCCTGATGCAATCA ATGGGAAGAATCCAAACTCTGCATCAGCTGATGATGTTTCAGTCTCGGCAGAAGAACTGGCAAAAGACGGGGCAGCCTCAAAGAATAGGACAACATTTTA CAAACTAGAGACGACAAAGATTCAGCTGATTTCTGCTGATGGACATCAAACTACAGTTGAACCAGAAGTTTTCAGGAGGGCCAAACCTGATGCAATTGCA CATTCAGCAGCCAAAATCATATCCCGTCTCAAAGATGGTGGCCAAAATGTCACGGAAGCATTGATATCTTTGTGTTGGAGATGTAAAGGTCTTCAAGTGG AGGAAGCAGCAGTTACTGGAGTGGATTCACTAGGGTTCAATTTGAGGGTTTGCTCGGGAACCCAAGTCCAGACTCTACGGTTCGTGTTTAACTCACGGGC AACTTCGGAATACAGCGCGGAGAGACAACTGAATGATTTGCTATTCCCACTGACCAAACATAGTCCCACGAAAAAGGAGACGCAGCAAAATGAACACTAG
AA sequence Show only first row Show all	>Lus10039291 pacid=23175561 polypeptide=Lus10039291 locus=Lus10039291.g ID=Lus10039291.BGIv1.0 annot-version=v1.0 MMMLMMVESATASRFNAGATFCSSAAPLSKYRGVGSLEELSRVSAATRRQLRTASFDLPWKKSHIPRASSISKRSVLLNSTIRASAGQLSSGSDPPEQNG KAQYHPFEEISGSASKGIGDARLTAQETCRTIVEVNCKATLMLSNLFDEEIHENVMWPDMSYVTDEYGNIYFQVKNDEDILQSLTSENNYVQAIIGFDSE DMVSEMELLENTDIGFGIEEFDEEDSDAEEDSDDDDYDEDIKAILEEDSDDDEDDDDDVGDWANLETMDSSHPMYFAKRLSRAASDDPIDFMKQPPTGLA IQGILRPAFGEEHTDIKRHMSGNKSKTQDPDAINGKNPNSASADDVSVSAEELAKDGAASKNRTTFYKLETTKIQLISADGHQTTVEPEVFRRAKPDAIA HSAAKIISRLKDGGQNVTEALISLCWRCKGLQVEEAAVTGVDSLGFNLRVCSGTQVQTLRFVFNSRATSEYSAERQLNDLLFPLTKHSPTKKETQQNEH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24060			Pentatricopeptide repeat (PPR)...		Lus10039291 [exp]	0	1
AT3G25470			bacterial hemolysin-related (....		Lus10008746 [exp]	1.7	0.9634
AT3G25470			bacterial hemolysin-related (....		Lus10002144 [exp]	4.0	0.9381
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	5.5	0.9475
AT2G26340			unknown protein		Lus10000477 [exp]	6.3	0.9561
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10008721 [exp]	6.7	0.9393
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	9.7	0.9183
AT1G27510			Protein of unknown function (D...		Lus10039967 [exp]	11.0	0.9233
AT2G17695			unknown protein		Lus10041839 [exp]	11.7	0.9185
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	11.7	0.9493
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10038343 [exp]	12.0	0.9434

Compare expression of checked genes

Lus10039291 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.