Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21190 303 / 1e-101 EMB1417 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18975 139 / 1e-38 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) AT1G04590 107 / 5e-26 EMB2748 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027535 [exp] 371 / 5e-129 AT4G21190 302 / 5e-103 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027533 [exp] 142 / 3e-41 AT4G21190 58 / 8e-11 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028526 [exp] 124 / 6e-33 AT4G18975 327 / 7e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10015943 [exp] 101 / 1e-24 AT1G04590 284 / 3e-95 unknown protein Lus10019008 [exp] 102 / 2e-24 AT1G04590 281 / 5e-93 unknown protein Lus10009120 [exp] 74 / 1e-14 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G148700 [exp] 321 / 6e-108 AT4G21190 339 / 3e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G076800 [exp] 145 / 1e-40 AT4G18975 320 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Potri.016G103000 [exp] 115 / 2e-29 AT1G04590 300 / 9e-101 unknown protein Potri.006G091500 [exp] 106 / 3e-26 AT1G04590 272 / 3e-90 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039292 pacid=23175522 polypeptide=Lus10039292 locus=Lus10039292.g ID=Lus10039292.BGIv1.0 annot-version=v1.0 ATGCTTTCATTACGGTACTGTGTGCCGCTTATCCCGACGAGAGTGCAATCGGTTCGAGCCCCTAAGAGTCCGAGGAGTTTTATTGTGAGTTTTCTATTCT CCTTCAGCTTCAATGCTAGCAAAGTTTTCAATTGGATGGTGAATACTTTGATGCAGGTATGTGAGCAGAAAGGGCCACGGCAAAGATATCCTCGAGTTTG GAAAACGAAGACAAAGATTGGAACCATCTCCAAGGCAGCTAAGCTTGTCGATTGTATAAAGGGATTGTCAAATGTGAAGGAGGAAGTGTATGGAGCTCTT GATTCATTTGTTGCTTGGGACTTGGAGTTCCCACTGATTACTGTGAAGAAAGCATTGAGGAGTCTTGAATTTCAGCAAGAATGGAAGAGGATAATTCAGG TGTCTAAGTGGATGCTAAACAAAGGGCAAGGAAGGACAATGGGAACATATTTCACCCTACTGAATGCATTAGCGGAGGACGAAAGGCTGGAGGAAGCAGA GGAGCTTTGGAACAAGCTGTTCATGAAATACCTGGAAGCCATGCCTCGTAAGTTCTTTGACAAGATGATGTCCATCTACTACAAGAAGGATATGCACGAC AAGATGTTTGAGGTACTGTGGAAGCACCCTTGCTCTCTCCTTCTTCATGAACTTCCTATATTTGCTGACATGGAGGAACTAGGCGTTCAGCCGAGTGCTT CAATCGTGAACATGGTGGGGAGTGTGTTCCAGCACCGAGGCATGCTGGACAAGTACGAGAAACTGAAGAGTAAGTACCCTCCGCCGAAATGGGGGATCAA GTACATCAAAGGGAAGCGTGTGAAGATTAGAGCGAAGCAGTACCGCAAGTATGATCGTGAATGGAGAGGTGGAGACGAGGGGTACACAAGCTCCGATGAA ATAGATGACGAAAGAGGTGCAAATATGAACAATGATGATGAGGTGGATGAAAACAATGATGAGGAAGATGTGGAAGACCAGGCTCCCGAAATGATCTCAA ATGAAGTGGACAAAACAGACACTTGTGCCGATGACTCGACTGATAGTTTAAGCAGTAGTGATGAGATTGCCTATGGAGGGAGTTTGATGACAATAGAGGA CAGTAGCTGCAATTTAGGAGGTAGCTGA
AA sequence Show only first row Show all	>Lus10039292 pacid=23175522 polypeptide=Lus10039292 locus=Lus10039292.g ID=Lus10039292.BGIv1.0 annot-version=v1.0 MLSLRYCVPLIPTRVQSVRAPKSPRSFIVSFLFSFSFNASKVFNWMVNTLMQVCEQKGPRQRYPRVWKTKTKIGTISKAAKLVDCIKGLSNVKEEVYGAL DSFVAWDLEFPLITVKKALRSLEFQQEWKRIIQVSKWMLNKGQGRTMGTYFTLLNALAEDERLEEAEELWNKLFMKYLEAMPRKFFDKMMSIYYKKDMHD KMFEVLWKHPCSLLLHELPIFADMEELGVQPSASIVNMVGSVFQHRGMLDKYEKLKSKYPPPKWGIKYIKGKRVKIRAKQYRKYDREWRGGDEGYTSSDE IDDERGANMNNDDEVDENNDEEDVEDQAPEMISNEVDKTDTCADDSTDSLSSSDEIAYGGSLMTIEDSSCNLGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10039292 [exp]	0	1
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Lus10027535 [exp]	1.4	0.9029
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10013615 [exp]	4.9	0.8748
AT5G16140			Peptidyl-tRNA hydrolase family...		Lus10031901 [exp]	7.9	0.8916
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	8.7	0.8529
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	8.8	0.8600
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10028120 [exp]	9.8	0.8380
					Lus10042279 [exp]	10.0	0.8650
					Lus10033476 [exp]	12.3	0.8598
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	16.9	0.8560
					Lus10024463 [exp]	19.0	0.7926

Compare expression of checked genes

Lus10039292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.