Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62650 588 / 0 Tic22-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027537 [exp] 1010 / 0 AT5G62650 604 / 0.0 Tic22-like family protein (.1) Lus10010502 [exp] 119 / 3e-32 AT5G62650 69 / 2e-15 Tic22-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G072100 [exp] 672 / 0 AT5G62650 643 / 0.0 Tic22-like family protein (.1) Potri.017G148900 [exp] 670 / 0 AT5G62650 618 / 0.0 Tic22-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04278 [flax] [poplar] Tic22 Tic22-like family
Representative CDS sequence Show only first row Show all	>Lus10039294 pacid=23175677 polypeptide=Lus10039294 locus=Lus10039294.g ID=Lus10039294.BGIv1.0 annot-version=v1.0 ATGGCCGCCTCGGCGGAGCCGCCGCAGAACCACCACCGACGTCATCATCCGTTTCCCAATTTCTTCCACTCAGCTACCTCCGCCGTCCTCTCTCTCTTGC CCAACCCCAGGACTTCATCAGCTCCTCCAATCACGTCTCCTTCTTCCTCGCCTCCTCCTCACGTCTGTATCCCGTTCAACTTCGTCGACTCGTCTTATCC ACTCGCTCGACAATCCGTCATCCGTTCTCCTCTCGGGTCCGGTCAGTCCGACTCGGTCTCCTCCACATCGGCGACGGTCAAGGGCTTATCCTCTGCCGAG TCAAACTCCGGCTTCCCGTCCACGGTCAGGATTTCCGGCCTGAATTCCAACGGCAAGGGGGGCGGGCCTGCTTTCGTTGGACAGGTTTTCAGTATGTGTG ATCTTTCTGGGACTGGATTGATGGCCGTCTCTACTTACATCGATCTCCCCTTCATCAATGAGAGAACGCCTGAGTGGCTGAAGAAGATTCTTGCACCGGT TACCAAAAAAGATAAGAACGGTCCTATGTTTAGATTCTTCATGGACTTAGGGGATGCAGTTTCGTACGTGAAGAAACTGAACATTCCCAGTGGTGTTGTT GGTGCTTGCCGTCTCGATTTGGCATATGAACATTTCAAGGAAAAACCTAATCTATTCCAGTTCGTTCCAAATAAAGAACAGGTGAAGGCAGCAAAGCAGC TCCTGAAGACAATTCCAGAAAGTGATGGGAAGACAACGGTGGACGGGGTTCCTATTTTTTCTGCTCATAACTTGGATATTGCTATAGCCACCTCAGACGG AATTAAATGGTATACTCCATACTTCTTCAATAAAAGTATGCTAGATGGCATTATTGAGGATTCTGTTGATCAGCATTTCCACACTTTAATACAAACTCGG CACATGCAGCGCCGACGAGATGTGGTTGATGATAACTTTGCAGCAGACGTGATGGAAGAAATGGCAGATAGCCTAATGGACCCACCCGAGGTTGATGAGA TGATGGATGAGATGGGCAACGTTGGTATTCCACTAAGTGTCATCTCAAAAGCTGCTGAAATGGAGCTTCTTTATGCGGTAGATAAGGTACTCCTGGGTAA CCGTTGGTTGAGGAAGGCCACTGGCATTCAGCCTAGGTTTCCCTATGTTGTTGATTCATTTGAGAGAAGGAGTGCCTATCCGTTTAAGAAAGCCTCAAAG ACAATCAGCTTAAGTGACGTTTCTCAAGCTGGTGGTAGTGATTCAGAGGTTGAACCGGAAAACAACACCCAAGCCAGTAGCTATGAAGAGAGACCAGATT TGCGACTGACGTTTGGAGATTGGTTTGGTTTGCGGTTGAAACAACCATTCAAACCGGCTAGGGAGACAGAAACAAGGACGGAGGGTTCCTCGAAGGAAGA GATGCAGCAGAAGCTAGTAGACAATCCACTTCTGCCGAAAATCACCATGGTAGGGATATCCACGGGGGAGACAGGTAAAGTGAGTAAAGCTAGTTTGAAG AAGACGATGGAGAATCTAAGAAAAGAGTTGGAGCAGGCGGACCAAGGTAAAACCTCCAGTAGTGATAATGGTGATGGTGATTTCAAAATCACAGATAGAG ATCCACTGTTTGTGGCCAACGTGGGTGATTACTCCCGGTGGATTCGTCGAGGAATGAGCTGA
AA sequence Show only first row Show all	>Lus10039294 pacid=23175677 polypeptide=Lus10039294 locus=Lus10039294.g ID=Lus10039294.BGIv1.0 annot-version=v1.0 MAASAEPPQNHHRRHHPFPNFFHSATSAVLSLLPNPRTSSAPPITSPSSSPPPHVCIPFNFVDSSYPLARQSVIRSPLGSGQSDSVSSTSATVKGLSSAE SNSGFPSTVRISGLNSNGKGGGPAFVGQVFSMCDLSGTGLMAVSTYIDLPFINERTPEWLKKILAPVTKKDKNGPMFRFFMDLGDAVSYVKKLNIPSGVV GACRLDLAYEHFKEKPNLFQFVPNKEQVKAAKQLLKTIPESDGKTTVDGVPIFSAHNLDIAIATSDGIKWYTPYFFNKSMLDGIIEDSVDQHFHTLIQTR HMQRRRDVVDDNFAADVMEEMADSLMDPPEVDEMMDEMGNVGIPLSVISKAAEMELLYAVDKVLLGNRWLRKATGIQPRFPYVVDSFERRSAYPFKKASK TISLSDVSQAGGSDSEVEPENNTQASSYEERPDLRLTFGDWFGLRLKQPFKPARETETRTEGSSKEEMQQKLVDNPLLPKITMVGISTGETGKVSKASLK KTMENLRKELEQADQGKTSSSDNGDGDFKITDRDPLFVANVGDYSRWIRRGMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62650			Tic22-like family protein (.1)		Lus10039294 [exp]	0	1
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10009796 [exp]	2.8	0.8894
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	3.5	0.8831
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	6.7	0.8684
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	6.9	0.8461
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10007064 [exp]	8.4	0.8397
AT1G44920			unknown protein		Lus10018656 [exp]	9.8	0.8292
AT5G01260			Carbohydrate-binding-like fold...		Lus10004826 [exp]	13.6	0.8506
AT2G26280		CID7	CTC-interacting domain 7 (.1)		Lus10038081 [exp]	13.7	0.8475
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	14.1	0.8122
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	14.5	0.8379

Compare expression of checked genes

Lus10039294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.