Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52830 169 / 1e-49 WRKY ATWRKY27, WRKY27 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) AT4G01250 147 / 1e-41 WRKY ATWRKY22, WRKY22 WRKY family transcription factor (.1) AT4G23550 140 / 5e-39 WRKY ATWRKY29, WRKY29 WRKY family transcription factor (.1) AT5G45050 132 / 5e-34 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G34830 128 / 1e-33 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) AT1G30650 124 / 3e-32 WRKY ATWRKY14, AR411, WRKY14 WRKY DNA-binding protein 14 (.1) AT3G58710 115 / 7e-30 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT1G29280 109 / 7e-28 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT5G45260 103 / 3e-24 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G23320 99 / 2e-23 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027538 [exp] 411 / 2e-143 AT5G52830 171 / 1e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Lus10032303 [exp] 151 / 4e-43 AT4G01250 171 / 1e-51 WRKY family transcription factor (.1) Lus10024676 [exp] 149 / 7e-43 AT4G01250 163 / 7e-49 WRKY family transcription factor (.1) Lus10007907 [exp] 147 / 3e-41 AT4G01250 228 / 2e-72 WRKY family transcription factor (.1) Lus10036399 [exp] 144 / 6e-41 AT4G01250 207 / 2e-66 WRKY family transcription factor (.1) Lus10038426 [exp] 133 / 2e-36 AT2G34830 252 / 1e-81 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1) Lus10018815 [exp] 128 / 6e-33 AT4G01250 149 / 4e-41 WRKY family transcription factor (.1) Lus10007305 [exp] 108 / 3e-28 AT1G29280 164 / 9e-51 WRKY DNA-binding protein 65 (.1) Lus10029252 [exp] 108 / 2e-27 AT1G29280 166 / 9e-51 WRKY DNA-binding protein 65 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G149000 [exp] 189 / 2e-56 AT5G52830 192 / 2e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.004G072000 [exp] 186 / 4e-55 AT5G52830 182 / 2e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY DNA-binding protein 27 (.1) Potri.014G090300 [exp] 151 / 6e-43 AT4G01250 250 / 1e-81 WRKY family transcription factor (.1) Potri.002G164400 [exp] 151 / 7e-43 AT4G01250 244 / 4e-79 WRKY family transcription factor (.1) Potri.001G099001 [exp] 148 / 6e-42 AT4G01250 138 / 2e-38 WRKY family transcription factor (.1) Potri.003G132700 [exp] 145 / 1e-40 AT4G01250 121 / 5e-32 WRKY family transcription factor (.1) Potri.001G460600 [exp] 137 / 1e-36 AT1G30650 322 / 2e-106 WRKY DNA-binding protein 14 (.1) Potri.011G157100 [exp] 134 / 2e-35 AT1G30650 305 / 1e-99 WRKY DNA-binding protein 14 (.1) Potri.011G070100 [exp] 114 / 9e-30 AT1G29280 237 / 3e-78 WRKY DNA-binding protein 65 (.1) Potri.004G060900 [exp] 112 / 9e-29 AT1G29280 247 / 3e-82 WRKY DNA-binding protein 65 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10039295 pacid=23175563 polypeptide=Lus10039295 locus=Lus10039295.g ID=Lus10039295.BGIv1.0 annot-version=v1.0 ATGGCTGAGGACGACTGGGATCTCACCGCCATCGTTAGGAGTTGCACAACCTCCCCCGCCGCCCCTAATGAAGAATCCGACCCCCACAACCCGCTCACCG GATTGACTTTCGAAGCCGAACCCGACCCGTTTGCCTTCCCGGATCTCTCACACACCGGATTCCACGAATTATTACAAGATTCGTATGACAACAAGCCTTT CTCGTCCGGTCAACGGAATCTTATTATTCCTCCTCCTCCGCTTACGCCGAAATCTTCCGATTTCGCTGGCCAAAGTCAGCGGAGGACGGCGGTGAGCCCG CGGGTGGTTGTTGTCAGAAACAACCAGCAACAGACGGCGCAGGATCTTGGGAATCGGTATCAACGGCAGATGCAAGGGTGCTCATCTTCTGGATACATGG GTAGTGGTAGTAGTAATCTGGCGTTTTCGTTTAGTTCTTCGTTGAGGAGCATGCAATCGCAGCCTGCAACCGTACGGCCAAGGAAAAAGAAGAATAACCA GAAGCGGCTGGTGGTTCAGGTGACGGCGGATAATCTGTCGAACGATGTTTGGGCTTGGCGGAAGTACGGACAAAAGCCCATCAAAGGATCTCCTTATCCA AGGAATTACTACAGATGCAGCAGTACGAAAGGGTGCGGAGCAAGAAAGCAAGTGGAGAGGAGCACTACGGACCCCAACATGTTCATCATAAGCTACGCCG GCGACCACACCCATCCCAAACCCACCCACCGGAACTCCCTCGCCGGAAGCACCCGGACAAAGTTCCCACTCAAAATAGAACCCGGCGGCGATGTATCCTC CACGTCAGCACCACCACCAACACTGCAAACAATTACAACCTCCCATGGTAAAAAACCGGCGGCCTGTTCGTCTCCGGCAGCAGGTTCATCCCCGACGACC CCGCTCTCTGCCACGATGGACCACGAAGCCGCAGTCAACTCTCGTACTATTGGAAATGATTTTTCATTTTCCCGCCAAACTTCACACTCTCCAAGCTTCA AGTGA
AA sequence Show only first row Show all	>Lus10039295 pacid=23175563 polypeptide=Lus10039295 locus=Lus10039295.g ID=Lus10039295.BGIv1.0 annot-version=v1.0 MAEDDWDLTAIVRSCTTSPAAPNEESDPHNPLTGLTFEAEPDPFAFPDLSHTGFHELLQDSYDNKPFSSGQRNLIIPPPPLTPKSSDFAGQSQRRTAVSP RVVVVRNNQQQTAQDLGNRYQRQMQGCSSSGYMGSGSSNLAFSFSSSLRSMQSQPATVRPRKKKNNQKRLVVQVTADNLSNDVWAWRKYGQKPIKGSPYP RNYYRCSSTKGCGARKQVERSTTDPNMFIISYAGDHTHPKPTHRNSLAGSTRTKFPLKIEPGGDVSSTSAPPPTLQTITTSHGKKPAACSSPAAGSSPTT PLSATMDHEAAVNSRTIGNDFSFSRQTSHSPSFK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52830	WRKY	ATWRKY27, WRKY2...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10039295 [exp]	0	1
					Lus10039778 [exp]	2.0	0.8794
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10018439 [exp]	2.4	0.8619
AT1G07630		PLL5	pol-like 5 (.1)		Lus10040823 [exp]	4.0	0.8374
AT1G07630		PLL5	pol-like 5 (.1)		Lus10016555 [exp]	6.0	0.8413
AT4G24240	WRKY	ATWRKY7, WRKY7	WRKY DNA-binding protein 7 (.1...		Lus10010053 [exp]	7.5	0.7938
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10013427 [exp]	9.0	0.8055
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	11.2	0.8307
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10042916 [exp]	13.0	0.8159
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Lus10042776 [exp]	13.0	0.8196
AT3G22060			Receptor-like protein kinase-r...		Lus10039699 [exp]	16.0	0.7931

Compare expression of checked genes

Lus10039295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.