Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52840 271 / 1e-94 NADH-ubiquinone oxidoreductase-related (.1) AT4G28005 110 / 8e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027539 [exp] 330 / 6e-118 AT5G52840 275 / 3e-96 NADH-ubiquinone oxidoreductase-related (.1) Lus10014951 [exp] 309 / 2e-109 AT5G52840 264 / 1e-91 NADH-ubiquinone oxidoreductase-related (.1) Lus10038835 [exp] 306 / 2e-108 AT5G52840 264 / 1e-91 NADH-ubiquinone oxidoreductase-related (.1) Lus10043440 [exp] 206 / 9e-67 AT3G20970 383 / 1e-134 ARABIDOPSIS THALIANA NFU DOMAIN PROTEIN 2, NFU domain protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G071900 [exp] 275 / 5e-96 AT5G52840 265 / 5e-92 NADH-ubiquinone oxidoreductase-related (.1) Potri.017G149100 [exp] 247 / 4e-85 AT5G52840 250 / 3e-86 NADH-ubiquinone oxidoreductase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04716 [flax] [poplar] ETC_C1_NDUFA5 ETC complex I subunit conserved region
Representative CDS sequence Show only first row Show all	>Lus10039296 pacid=23175676 polypeptide=Lus10039296 locus=Lus10039296.g ID=Lus10039296.BGIv1.0 annot-version=v1.0 ATGTTTCTGCGGGCGGTGGCGCGGCCGCTAATGGCCAAGGTGAAACAGACGACGGGGATCGTCGGTCTCGAAGTGGTGCCCAACGCTCGAGAAGTACTGA TCAGCCTTTACAACAAAACCCTAAATGAGATTCAGGCGGTCCCTTCCGATGAAGGATACCGGAAGGCGGTTGAGAGTTTTACCAAGCACAGGCTGAAGGT TTGCCAGGAGGAAGAGGATTGGGAGTCGATCGAGAAGAAGCTTGGTTGCGGTCAGGTCGAGGAGCTGATTGAGGAGGCCCAGGATGAGCTCAAGCTCATC GGGAAAATGATCGAGTGGGATCCCTGGGGTGTTCCTGATGACTATGAATGTGAGGTCATAGAGAATGACGCTCCAGTTCCTAAGCACGTCCCTCTTCATC GACCCGGTCCTCTCCCCGAGGAATTCTACACCACGCTTGGGACCTTGCAATCGAATTCCAAGGAAGCACCTGCTGTTGCCTCCGGTGGATCGAAGGTACC GGAGTAG
AA sequence Show only first row Show all	>Lus10039296 pacid=23175676 polypeptide=Lus10039296 locus=Lus10039296.g ID=Lus10039296.BGIv1.0 annot-version=v1.0 MFLRAVARPLMAKVKQTTGIVGLEVVPNAREVLISLYNKTLNEIQAVPSDEGYRKAVESFTKHRLKVCQEEEDWESIEKKLGCGQVEELIEEAQDELKLI GKMIEWDPWGVPDDYECEVIENDAPVPKHVPLHRPGPLPEEFYTTLGTLQSNSKEAPAVASGGSKVPE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10039296 [exp]	0	1
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Lus10030497 [exp]	1.4	0.9291
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10016278 [exp]	3.5	0.9168
AT4G30010			unknown protein		Lus10015329 [exp]	4.7	0.8983
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	4.9	0.9194
AT4G30010			unknown protein		Lus10001443 [exp]	6.5	0.9071
AT4G00860		AT0ZI1, ATOZI1	Arabidopsis thaliana ozone-ind...		Lus10007542 [exp]	7.3	0.9174
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Lus10023355 [exp]	8.2	0.8866
AT1G09630		ATRAB-A2A, ATRA...	ARABIDOPSIS RAB GTPASE A2A, RA...		Lus10041116 [exp]	8.8	0.8508
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029954 [exp]	11.2	0.8942
AT2G42210		ATOEP16-3	Mitochondrial import inner mem...		Lus10012024 [exp]	11.5	0.9143

Compare expression of checked genes

Lus10039296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.