Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11260 388 / 2e-134 RPR1, ETA3, EDM1, ATSGT1B, SGT1B ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) AT4G23570 377 / 3e-130 SGT1A phosphatase-related (.1.2.3) AT2G42810 72 / 1e-13 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 65 / 1e-11 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G17970 63 / 1e-10 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT1G62740 61 / 5e-10 Hop2 Hop2, stress-inducible protein, putative (.1) AT3G07370 57 / 4e-09 ATCHIP, CHIP carboxyl terminus of HSC70-interacting protein (.1) AT1G12270 58 / 5e-09 Hop1 Hop1, stress-inducible protein, putative (.1) AT3G04710 56 / 1e-08 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT4G12400 56 / 2e-08 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027540 [exp] 676 / 0 AT4G11260 412 / 2e-144 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10024680 [exp] 450 / 7e-159 AT4G11260 459 / 2e-162 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10032305 [exp] 400 / 1e-139 AT4G11260 417 / 9e-147 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Lus10021905 [exp] 61 / 3e-10 AT1G04190 515 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041189 [exp] 59 / 1e-09 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003260 [exp] 59 / 3e-09 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10006559 [exp] 57 / 1e-08 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10028154 [exp] 56 / 3e-08 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1) Lus10042854 [exp] 56 / 3e-08 AT1G53300 749 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G071100 [exp] 489 / 2e-174 AT4G11260 385 / 1e-133 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.017G149800 [exp] 478 / 7e-170 AT4G11260 419 / 1e-146 ENHANCER OF TIR1-1 AUXIN RESISTANCE 3, ENHANCED DOWNY MILDEW 1, phosphatase-related (.1) Potri.008G156500 [exp] 62 / 1e-10 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 61 / 3e-10 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G248700 [exp] 57 / 3e-09 AT3G07370 387 / 7e-137 carboxyl terminus of HSC70-interacting protein (.1) Potri.014G141800 [exp] 57 / 1e-08 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.012G046900 [exp] 56 / 2e-08 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 56 / 2e-08 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.003G113400 [exp] 55 / 5e-08 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.001G205300 [exp] 55 / 5e-08 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF04969 [flax] [poplar] CS CS domain CL0190 [flax] [poplar] PF05002 [flax] [poplar] SGS SGS domain
Representative CDS sequence Show only first row Show all	>Lus10039297 pacid=23175572 polypeptide=Lus10039297 locus=Lus10039297.g ID=Lus10039297.BGIv1.0 annot-version=v1.0 ATGGCGTCCGATCTCGAGAAGAAGGCCAAGGAGGCGTTCATCGACGACCACTTCCAGCTCGCCGCCGATCTCTACTCCCAGGCTATCGATCTTAGCCCTA ACAATCCTGACCTCTTCGTTGACCGCGCTCAGGCCAATATCAAACTCGGCTATTTTACCGAGGCGGTTTCTGATGCGAACAAAGCAATTCAACTGGACTC TTCAATTGCCAGAGCATATTTACGCAAGGGCGTAGCGTGTATGAAGCTTGAAGAGTATGAAACTGGTAAGGCAGCCCTTGATACAGGTGTATCCTTGGCT TCAGATGACCAGAAATTCAAGTTCACTACCTTGATCAAAGAATGTGAAGATCGCATTGCTGAGGAACTAGGCCAAATTCCAAAACAGGAGGTGGAAGTGG AACCTCCATCAAATTCTGCACCGATAGAAGAGGAACCACTGAATGGTGTCTCCGACCAGGCACAAAATGTGATTCCACCCAAACCCATGTACAAGCATGA TTTCTATCAGAAGCCCGAGGAGGTTGTTGTGACTATATTTGCAAAGGGTGCGCCAGCTGACCGTGTCTCGGTTGACTTCGGTGATCAAATTCTAAGCGTT AGAATCGACTTTCCTGAGGAAGATGCATACCATCTCCAACATCGTTTGTTCGGCAAGATTGTACCTGCCAACTGCAAGTACATTGTATTGTCTACAAAAG TTGAAATCCGTCTTGTTAAAGCTGAGCCTATTCACTGGACGTCTCTAGAATACAAGGATGCAGCAGTTGTCAGAAGGGTGGACACTTCCTCTGAGGTTGC CAAGAGACCAGCATATCCATCCTCAAAGGGAAGAAAAGTGGACTGGGATAAACTTGAAGCCCAAGTGAAGCAGGAGGAAAAGGAGGAACAGCTGGACGGT GATGCTGGTCTGAACAAGTTCTTCAGGGAAATATACAAGGATGCTGACGAAGACACGAGAAGAGCGATGCAGAAATCTTTCGTGGAGTCGAATGGGACGG TGCTGTCAACCAACTGGAAGGACATAGGGGCTAAGAAGGTGGAAGGAAGTGCTCCTGATGGTATGGAGATGAGGAAATGGGAGTACTGA
AA sequence Show only first row Show all	>Lus10039297 pacid=23175572 polypeptide=Lus10039297 locus=Lus10039297.g ID=Lus10039297.BGIv1.0 annot-version=v1.0 MASDLEKKAKEAFIDDHFQLAADLYSQAIDLSPNNPDLFVDRAQANIKLGYFTEAVSDANKAIQLDSSIARAYLRKGVACMKLEEYETGKAALDTGVSLA SDDQKFKFTTLIKECEDRIAEELGQIPKQEVEVEPPSNSAPIEEEPLNGVSDQAQNVIPPKPMYKHDFYQKPEEVVVTIFAKGAPADRVSVDFGDQILSV RIDFPEEDAYHLQHRLFGKIVPANCKYIVLSTKVEIRLVKAEPIHWTSLEYKDAAVVRRVDTSSEVAKRPAYPSSKGRKVDWDKLEAQVKQEEKEEQLDG DAGLNKFFREIYKDADEDTRRAMQKSFVESNGTVLSTNWKDIGAKKVEGSAPDGMEMRKWEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10039297 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10036929 [exp]	1.0	0.9398
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10027540 [exp]	1.4	0.9338
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Lus10019261 [exp]	5.7	0.9212
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	8.5	0.9097
AT1G50700		CPK33	calcium-dependent protein kina...		Lus10001146 [exp]	9.5	0.8780
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	10.6	0.9178
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	14.7	0.9107
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10031148 [exp]	15.0	0.9070
AT1G04850			ubiquitin-associated (UBA)/TS-...		Lus10017103 [exp]	15.6	0.9057
AT3G20920			translocation protein-related ...		Lus10030136 [exp]	16.4	0.8922

Compare expression of checked genes

Lus10039297 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.