Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51160 296 / 3e-104 SNARE-like superfamily protein (.1.2) AT5G02280 72 / 2e-16 SNARE-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027541 [exp] 317 / 9e-113 AT1G51160 323 / 5e-115 SNARE-like superfamily protein (.1.2) Lus10023793 [exp] 71 / 7e-16 AT5G02280 261 / 2e-91 SNARE-like superfamily protein (.1) Lus10010836 [exp] 69 / 4e-15 AT5G02280 259 / 2e-90 SNARE-like superfamily protein (.1) Lus10024390 [exp] 68 / 6e-15 AT5G02280 263 / 4e-92 SNARE-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G149900 [exp] 301 / 1e-106 AT1G51160 332 / 2e-118 SNARE-like superfamily protein (.1.2) Potri.009G069800 [exp] 72 / 1e-16 AT5G02280 267 / 1e-93 SNARE-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0431 [flax] [poplar] PF PF04099 [flax] [poplar] Sybindin Sybindin-like family
Representative CDS sequence Show only first row Show all	>Lus10039298 pacid=23175505 polypeptide=Lus10039298 locus=Lus10039298.g ID=Lus10039298.BGIv1.0 annot-version=v1.0 ATGCAATTCTTCGGAGGCTCCGACATCAGCCCATCGCCGCCGGCACCAACCGCTCCAGGAAACAATGCGAACATGATCTACATCTTCAACAGGAACGGCG TGTGTCTCCTGTACAAGGAGTGGAATAGGCCGCTCCATACCCTCAACGCCCAGCAGGATCACAAGCTCATGTTTGGTTTGCTCTTCTCCCTCAAGTCGTT GACAGCTAAAATGGATCCCACCAATGCTGAGAAAGGGAACCTTGGGGTGCCTCAGTTACCTGGCCAGGGTTGTTCATTTCACAGCTTTCGTACCAACACT TACAAGCTTAGTTTCATGGAAACTCCTTCTGGTATAAAGCTTATCTTGGTTACTCATCCTAAGACTGGTGATCTAAGGGACTCCCTCAAGTACATTTACA ATTTGTATGTTGAGTATGTTGTCAAGAACCCACTTTACACTCCTGGAACTCCGGTCAGGTGTGAACTTTTCGACACTGCGCTTGACCAATATGTAAGAAG CATTGCTTAA
AA sequence Show only first row Show all	>Lus10039298 pacid=23175505 polypeptide=Lus10039298 locus=Lus10039298.g ID=Lus10039298.BGIv1.0 annot-version=v1.0 MQFFGGSDISPSPPAPTAPGNNANMIYIFNRNGVCLLYKEWNRPLHTLNAQQDHKLMFGLLFSLKSLTAKMDPTNAEKGNLGVPQLPGQGCSFHSFRTNT YKLSFMETPSGIKLILVTHPKTGDLRDSLKYIYNLYVEYVVKNPLYTPGTPVRCELFDTALDQYVRSIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51160			SNARE-like superfamily protein...		Lus10039298 [exp]	0	1
AT2G46850			Protein kinase superfamily pro...		Lus10005138 [exp]	2.4	0.9026
AT5G16890			Exostosin family protein (.1)		Lus10039145 [exp]	3.5	0.8954
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10035970 [exp]	3.7	0.8654
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000615 [exp]	7.5	0.8614
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	9.9	0.8512
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Lus10022882 [exp]	12.2	0.8797
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10020226 [exp]	12.3	0.8496
AT3G52730			ubiquinol-cytochrome C reducta...		Lus10014198 [exp]	19.5	0.8601
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10030059 [exp]	19.7	0.8770
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10029644 [exp]	20.0	0.8848

Compare expression of checked genes

Lus10039298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.