Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16520 189 / 1e-57 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT4G01070 97 / 2e-23 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01390 86 / 4e-19 UDP-Glycosyltransferase superfamily protein (.1) AT1G01420 79 / 1e-16 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT3G21790 72 / 2e-14 UDP-Glycosyltransferase superfamily protein (.1) AT1G07250 71 / 6e-14 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT2G18570 68 / 4e-13 UDP-Glycosyltransferase superfamily protein (.1) AT3G21780 67 / 1e-12 UGT71B6 UDP-glucosyl transferase 71B6 (.1) AT3G21800 66 / 2e-12 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT1G07240 66 / 4e-12 UGT71C5 UDP-glucosyl transferase 71C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027542 [exp] 366 / 2e-126 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039301 [exp] 305 / 3e-102 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039302 [exp] 143 / 7e-40 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10026795 [exp] 106 / 3e-26 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10036087 [exp] 97 / 6e-23 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1) Lus10029453 [exp] 94 / 1e-21 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029452 [exp] 92 / 4e-21 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 85 / 8e-19 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 83 / 5e-18 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G150000 [exp] 234 / 1e-74 AT3G16520 503 / 1e-176 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 228 / 2e-72 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070900 [exp] 227 / 5e-72 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 220 / 3e-69 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G071000 [exp] 219 / 5e-69 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 216 / 1e-67 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150100 [exp] 200 / 2e-61 AT3G16520 451 / 9e-156 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G035800 [exp] 148 / 8e-42 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G036000 [exp] 144 / 2e-40 AT3G16520 385 / 1e-130 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027800 [exp] 143 / 8e-40 AT3G16520 355 / 1e-118 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039299 pacid=23175654 polypeptide=Lus10039299 locus=Lus10039299.g ID=Lus10039299.BGIv1.0 annot-version=v1.0 ATGGCAGCTAAAACAGAAGCCGTAGTGCTTTACCCATCGCCAGCAATCGGCCATTTACTATCCATGGTGGAGCTCGGCCGTCTCATCCTAACCCGCCGTC CTTCACTATCAATCCACATAATCCTCGCCCCCTCCCCTTACCAATCAACCGTCACTGCCCCCTACATCTCCACCGTCTCCGCCGTCACTCCCTCGATCAC CTTCCACCACCTCCCTCCTCCGCCTCCGGCCACCGCCGCCTCGATCCACCACGAGATACTCATGATCGAAACCCTCCGCCTCAGTCAGCCGAATCTCCGC TCCGCCCTGGCGTCCATAATCTCGCAGTACGATGTCGTTCACGCCCTGATCTTTGATGTCTTCTGCACCACCGTAGCCCTCTCTGTCGCCGACGAGCTCG GTGTCCCCGGCTACCTGTACTCCCCCTCCGGCGCCGCCAGCGTCGGATTCATACTCCATCTCCCCACCCTACACGAGAAATCCGCCGAGAGCCTAAACAT TCCCGGAGTGCCGAAATTGGCCGCGAGAGATGTCCCGGAGATACTCGCCGACCGGAACGACGGTGTGTACTGCAGCTTCGTTGAGTTCGGGACTCAATCG CGCCGATCCGCCGGACTGATAGTCAACACGTTCGAGTCCCTGGAGAGTAGAGCGGTGAAAGCGATTTCCGAGGGGTTGTGCATTCCCGACGTCCAACTCC GCCAATCTACTGCATCGGACCATTGA
AA sequence Show only first row Show all	>Lus10039299 pacid=23175654 polypeptide=Lus10039299 locus=Lus10039299.g ID=Lus10039299.BGIv1.0 annot-version=v1.0 MAAKTEAVVLYPSPAIGHLLSMVELGRLILTRRPSLSIHIILAPSPYQSTVTAPYISTVSAVTPSITFHHLPPPPPATAASIHHEILMIETLRLSQPNLR SALASIISQYDVVHALIFDVFCTTVALSVADELGVPGYLYSPSGAASVGFILHLPTLHEKSAESLNIPGVPKLAARDVPEILADRNDGVYCSFVEFGTQS RRSAGLIVNTFESLESRAVKAISEGLCIPDVQLRQSTASDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039299 [exp]	0	1
AT5G16920			Fasciclin-like arabinogalactan...		Lus10039146 [exp]	11.7	0.7123
AT1G30320			Remorin family protein (.1)		Lus10038522 [exp]	19.4	0.6928
AT3G58480			calmodulin-binding family prot...		Lus10016219 [exp]	64.0	0.6788
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	185.5	0.6420
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Lus10035566 [exp]	255.3	0.6354

Compare expression of checked genes

Lus10039299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.