Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16520 469 / 3e-163 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT4G01070 295 / 1e-94 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01420 270 / 3e-85 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT1G01390 268 / 3e-84 UDP-Glycosyltransferase superfamily protein (.1) AT2G29740 266 / 8e-84 UGT71C2 UDP-glucosyl transferase 71C2 (.1) AT1G07240 261 / 1e-81 UGT71C5 UDP-glucosyl transferase 71C5 (.1) AT4G15280 260 / 2e-81 UGT71B5 UDP-glucosyl transferase 71B5 (.1) AT3G21750 251 / 4e-78 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT3G21790 252 / 6e-78 UDP-Glycosyltransferase superfamily protein (.1) AT3G21760 251 / 1e-77 HYR1 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027542 [exp] 633 / 0 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039302 [exp] 440 / 2e-151 AT3G16520 393 / 2e-133 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10039299 [exp] 305 / 8e-102 AT3G16520 192 / 1e-58 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10029453 [exp] 302 / 1e-97 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005950 [exp] 301 / 7e-97 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 298 / 5e-96 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026795 [exp] 296 / 3e-95 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10029452 [exp] 295 / 1e-94 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10036087 [exp] 288 / 5e-92 AT3G21790 455 / 3e-157 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G070900 [exp] 568 / 0 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 567 / 0 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 566 / 0 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G071000 [exp] 565 / 0 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150000 [exp] 559 / 0 AT3G16520 503 / 1e-176 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 558 / 0 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150100 [exp] 504 / 8e-177 AT3G16520 451 / 9e-156 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027800 [exp] 467 / 6e-162 AT3G16520 355 / 1e-118 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027700 [exp] 452 / 2e-156 AT3G16520 339 / 3e-112 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G035800 [exp] 438 / 5e-151 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10039301 pacid=23175560 polypeptide=Lus10039301 locus=Lus10039301.g ID=Lus10039301.BGIv1.0 annot-version=v1.0 ATGACAACCAACAACACAGAAGCCATCGTTCTCTACCCATCGCCGGCGATCGGCCATTTACTATCCATGGTGGAGCTCGGCCGCCTAATCCTAACCCACC GTCCTTCCCTCTCAATCAACATCATCCTCGCCTCCGCACCTTACCAATCATCCACCACCGCCCCTTACATCTCCGCTATCTCCACCGTCACCCCTGCAAT CACCTTCCATCACCTCCCTCCAGTATCCGCCGCCGTCAACTCCAGCCACCACGAGTTAATCATGATCGAAACCCTCCGCCTCAGCCTTCCTCATCTCAAA CGCACACTCCAATCAATAATTACAAAATACGACGCCGTTCATGCCTTTGTTTACGATTTCTTCTGCTCCGCCGCGCTCTCCGTCGCCGACGAGCTCGGCG TACCCGGATACCAGTTCTCCACTTCCGGCGCCGCCTGCCTCGGATTCTTCCTCTATCTCCCCACCCTTCATAAAACCACGTCCGTCAGCTTCAAAGACCT CGACAACACAGATCTGGAAATTCCGGGAGTCCCAAAACTGCCCTCACGCGACGTGCCGAAGATCCTCCTCGACCGGGACGACGTCGTTTACTCGTATTTC CTTGAGTTCGGTACTCTTCTGCCCAAATCGGCCGGGTTGATAGTTAACTCATTCGATTCCGTGGAGGAAAAAGCAGTAAAAGCAATTTCCGAAGGATTCT GCGTTCCCGACGGTCCGACCCCGCCGATCTACTGCATCGGACCGTTAATCGCAGCCGGAGACGATAGGAAATCCGACGGTGGAGAATGCATGACGTGGCT CGATTCTCAGCCGAAACGGAGTGTCGTTTTCTTGTGCTTTGGGAGCTTGGGAATTTTTTCCAAAGACCAGCTGAGGGAGATAGCGATTGGACTAGAGAGG AGTACGGTGCGATTTTTGTGGGTTGTGCGGGACCCACCTAAGGCAGACGGAGACAACCAAAATCTCGCCGTTTTGGAGGCGGTAGAAGAAGGATTGGAGA CTCTGCTTCCCGAGGGGATTCTGGAGAGGACTAAGGGAAGGGGACACGTGGTGAAGTCATGGGCCCCACAGGTGGCGGTTCTAAACCACGAGTCAGTGGG TGGGTTCGTAACTCACTGTGGTTGGAACTCAGTTCTGGAATCGGTTAGGGCTGGAGTGCCAATGGTGGCTTGGCCATTGTATGCTGAGCAGAGGTTTAAT CGGGTTCTATTAGTGGAGGAGATCAGGATTGCTTTGCCGATGATGGAAAGCGACGAGAGTGGGTTTGTGAAGGCAGATGAGGTGGAGAGGCGGGTGAAAG AGTTGATGGAATCAGAAGGAAGAGGTGAGTTGGTGCGGCGACAGACGATTAAAATGAAGAATGAGGCTAGGAGTGCTGTGGCGGAAGGCGGTTCTTCTCG TGTGGCGTTGAGTCAGCTCGTTGACTCGTGGAGGTCAAAATGA
AA sequence Show only first row Show all	>Lus10039301 pacid=23175560 polypeptide=Lus10039301 locus=Lus10039301.g ID=Lus10039301.BGIv1.0 annot-version=v1.0 MTTNNTEAIVLYPSPAIGHLLSMVELGRLILTHRPSLSINIILASAPYQSSTTAPYISAISTVTPAITFHHLPPVSAAVNSSHHELIMIETLRLSLPHLK RTLQSIITKYDAVHAFVYDFFCSAALSVADELGVPGYQFSTSGAACLGFFLYLPTLHKTTSVSFKDLDNTDLEIPGVPKLPSRDVPKILLDRDDVVYSYF LEFGTLLPKSAGLIVNSFDSVEEKAVKAISEGFCVPDGPTPPIYCIGPLIAAGDDRKSDGGECMTWLDSQPKRSVVFLCFGSLGIFSKDQLREIAIGLER STVRFLWVVRDPPKADGDNQNLAVLEAVEEGLETLLPEGILERTKGRGHVVKSWAPQVAVLNHESVGGFVTHCGWNSVLESVRAGVPMVAWPLYAEQRFN RVLLVEEIRIALPMMESDESGFVKADEVERRVKELMESEGRGELVRRQTIKMKNEARSAVAEGGSSRVALSQLVDSWRSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039301 [exp]	0	1
AT2G35490			Plastid-lipid associated prote...		Lus10035384 [exp]	1.0	0.9428
AT5G03555			permease, cytosine/purines, ur...		Lus10014397 [exp]	2.4	0.9274
AT5G52450			MATE efflux family protein (.1...		Lus10029668 [exp]	5.9	0.9112
AT2G46735			unknown protein		Lus10002690 [exp]	6.3	0.9176
AT3G61320			Bestrophin-like protein (.1)		Lus10030389 [exp]	7.4	0.8979
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	8.3	0.9203
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10042424 [exp]	8.9	0.8999
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10007586 [exp]	9.4	0.9027
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	13.0	0.9066
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	13.3	0.8694

Compare expression of checked genes

Lus10039301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.