Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16520 365 / 2e-122 UGT88A1 UDP-glucosyl transferase 88A1 (.1.2.3) AT1G01420 257 / 3e-80 UGT72B3 UDP-glucosyl transferase 72B3 (.1) AT4G01070 255 / 2e-79 UGT72B1, GT72B1 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) AT1G01390 254 / 5e-79 UDP-Glycosyltransferase superfamily protein (.1) AT2G18570 241 / 5e-74 UDP-Glycosyltransferase superfamily protein (.1) AT3G21790 239 / 2e-73 UDP-Glycosyltransferase superfamily protein (.1) AT3G21800 236 / 3e-72 UGT71B8 UDP-glucosyl transferase 71B8 (.1) AT1G07250 236 / 4e-72 UGT71C4 UDP-glucosyl transferase 71C4 (.1) AT3G21750 234 / 1e-71 UGT71B1 UDP-glucosyl transferase 71B1 (.1) AT2G29740 233 / 8e-71 UGT71C2 UDP-glucosyl transferase 71C2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039301 [exp] 426 / 5e-146 AT3G16520 481 / 9e-168 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10027542 [exp] 367 / 4e-123 AT3G16520 431 / 3e-148 UDP-glucosyl transferase 88A1 (.1.2.3) Lus10029453 [exp] 262 / 3e-82 AT4G01070 515 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10036088 [exp] 260 / 4e-81 AT3G21760 377 / 3e-126 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1) Lus10005950 [exp] 259 / 7e-81 AT4G01070 573 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10005951 [exp] 256 / 6e-80 AT4G01070 510 / 5e-179 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10026795 [exp] 254 / 3e-79 AT3G21750 448 / 5e-155 UDP-glucosyl transferase 71B1 (.1) Lus10029452 [exp] 255 / 4e-79 AT4G01070 582 / 0.0 UDP-GLUCOSE-DEPENDENT GLUCOSYLTRANSFERASE 72 B1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10036086 [exp] 253 / 2e-78 AT3G21760 431 / 2e-147 HYPOSTATIN RESISTANCE 1, UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G027800 [exp] 457 / 2e-158 AT3G16520 355 / 1e-118 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.015G027700 [exp] 454 / 5e-157 AT3G16520 339 / 3e-112 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069600 [exp] 449 / 6e-155 AT3G16520 498 / 2e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070900 [exp] 446 / 6e-154 AT3G16520 478 / 2e-166 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G070000 [exp] 446 / 9e-154 AT3G16520 474 / 4e-165 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G071000 [exp] 445 / 2e-153 AT3G16520 485 / 2e-169 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.004G069800 [exp] 442 / 2e-152 AT3G16520 496 / 7e-174 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.017G150000 [exp] 428 / 8e-147 AT3G16520 503 / 1e-176 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G035800 [exp] 418 / 5e-143 AT3G16520 387 / 5e-131 UDP-glucosyl transferase 88A1 (.1.2.3) Potri.012G036000 [exp] 410 / 4e-140 AT3G16520 385 / 1e-130 UDP-glucosyl transferase 88A1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10039302 pacid=23175485 polypeptide=Lus10039302 locus=Lus10039302.g ID=Lus10039302.BGIv1.0 annot-version=v1.0 ATGGCTGTCGACACAATCGTCCTGTACCCATCTCCCGGCAGGGGCCACATCGTCTCCACCGTCGAATTCGGCAAGCTCCTCCTCCGCCACTACCCCGCCG TAACAATCACCGTCTTCGTCATCCCTCTCCCCTTTGAATCCTCTTCCACCGACTCCTACCTCCATGAAGTTTCCACCTCCGTCCCGTCTATCACTTTCCT CACCCTCCCTCTCCTATCTCCTCCCGCCGCCCCCGGCGGCGGCGGAAACTCCACCACCGCAATCCCCACTCTGCTCTACCAACTCCCGCTGCTTCAGAAC TCCAACTTCCGCCACCTCATCACAGATCTCTCCAAATCCATGAAAATCAAAGCGTTGGTCATCGACTTCTTCTGCAACGCTGCCGTTTCAGTTGCCGACG ATATTAAAATCCCCTGCTACTTCTACTTCACCTCTTGCTTATACGGCCTCGCCATATTTCTCTACTTCCCCGTAATCCATGAGAGCTCCGAAGTCAGCTT GAAGGACGTTCCCGATTCGCTTGTTCCCATACCTGGACTTCAGTCGATTCCGTCGGAGGATATTCCTCCGGCGATGGCCGATCGTGGCGGCAGAGCTTAT TCCGGTTTCATCAGTACAGCGTACAATATGGTGAAATCCGCCGGGATAATCGTTAACACCTTTGAATTGCTCGAAGGCAACGCGTTTCGAGCGATTTCTG AAGGCAGGTGTACTCCGGGCAAGTCCCCGCCGCCGATTTACTGCATCGGACCAATTGTGGAGGAAAAGGACAAAAACGGTAAGGACGCTTGTCTTACGTG GCTGGACTCCCAGCCGAAGGGCAGCGTTGTCTTTTTATGTTTCGGCAGCATGGGTGTCTTTTCGCGTGGTCAGATAACGGAAATTGCGATCGGATTGGAG AGGAGTGGGGCCCGATTTCTGTGGGTGGTCAAGAACCCGGCGCCGGGGGATGAGACCGGCGGAACGATGTCGTCGATGGAGGAGCCAGATCTGGATTCGA TATTGCCGGATGGGTATATGGTGCGGACGAAGGAGAGAGGACTAGTGGTGAAATCGTGGGCCCCGCAAGTGCAAGTGCTGAACCACGAGTCAGTGGGTGG GTTCGTGACTCACTGCGGATGGAACTCGGTGTTGGAATCTCTGTGCGCCGGGGTTCCGATGCTGGGCTGGCCGATTTACGCGGAGCAGAAGCTTAACCGG CATTTCTTGGTGCAGGAGATGGGAGTGTTGCTGAAGTTGACGGAAACAGAGGACGGCAGGGGGATGGTGAGCGCTGGTGAGTTGGAGAAAGGAGTTGTGG AGTTGATGTCGCCGGAGTCGGAGAAAGGGAAGGCGGTAAGGGAACGAGTGGCGGCGATGCAGGAAGGTGCCGCGGCGGCGATGAGCGACGGGGGAAGTTC CCGCGTTGCAATTAGCAAACTAGTGGATGCATTTAAACGAGAATAA
AA sequence Show only first row Show all	>Lus10039302 pacid=23175485 polypeptide=Lus10039302 locus=Lus10039302.g ID=Lus10039302.BGIv1.0 annot-version=v1.0 MAVDTIVLYPSPGRGHIVSTVEFGKLLLRHYPAVTITVFVIPLPFESSSTDSYLHEVSTSVPSITFLTLPLLSPPAAPGGGGNSTTAIPTLLYQLPLLQN SNFRHLITDLSKSMKIKALVIDFFCNAAVSVADDIKIPCYFYFTSCLYGLAIFLYFPVIHESSEVSLKDVPDSLVPIPGLQSIPSEDIPPAMADRGGRAY SGFISTAYNMVKSAGIIVNTFELLEGNAFRAISEGRCTPGKSPPPIYCIGPIVEEKDKNGKDACLTWLDSQPKGSVVFLCFGSMGVFSRGQITEIAIGLE RSGARFLWVVKNPAPGDETGGTMSSMEEPDLDSILPDGYMVRTKERGLVVKSWAPQVQVLNHESVGGFVTHCGWNSVLESLCAGVPMLGWPIYAEQKLNR HFLVQEMGVLLKLTETEDGRGMVSAGELEKGVVELMSPESEKGKAVRERVAAMQEGAAAAMSDGGSSRVAISKLVDAFKRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039302 [exp]	0	1
AT1G72970		HTH, EDA17	HOTHEAD, embryo sac developmen...		Lus10015623 [exp]	6.0	0.8360
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10003311 [exp]	7.1	0.8124
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	8.6	0.8535
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10018747 [exp]	10.8	0.8596
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012007 [exp]	14.8	0.7678
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10028869 [exp]	16.9	0.8227
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10024832 [exp]	20.0	0.8523
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10019130 [exp]	24.4	0.7614
AT5G17670			alpha/beta-Hydrolases superfam...		Lus10005666 [exp]	24.7	0.8461
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	26.1	0.8252

Compare expression of checked genes

Lus10039302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.