Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33280 75 / 2e-14 B3 REM16 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 72 / 4e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 70 / 1e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 70 / 2e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18990 70 / 8e-13 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT2G24650 66 / 5e-11 B3 REM13 DNA binding;DNA binding;sequence-specific DNA binding transcription factors (.1) AT2G24690 63 / 5e-10 B3 REM11 Transcriptional factor B3 family protein (.1) AT1G26680 61 / 2e-09 B3 REM17 transcriptional factor B3 family protein (.1) AT1G49480 54 / 5e-08 B3 REM19, RTV1 related to vernalization1 1 (.1) AT4G31640 55 / 7e-08 B3 REM5 transcriptional factor B3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027543 [exp] 715 / 0 AT3G18990 63 / 2e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10015266 [exp] 152 / 4e-38 AT5G58610 558 / 7e-176 PHD finger transcription factor, putative (.1) Lus10038189 [exp] 116 / 6e-29 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10002934 [exp] 117 / 2e-28 AT3G18990 112 / 5e-28 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025388 [exp] 111 / 3e-27 AT4G33280 70 / 8e-14 AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 108 / 4e-26 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10000368 [exp] 108 / 5e-25 AT5G63900 84 / 3e-17 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (.1) Lus10025507 [exp] 105 / 6e-25 AT3G18990 91 / 1e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10015248 [exp] 101 / 3e-24 AT4G33280 50 / 3e-07 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G230100 [exp] 120 / 2e-28 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 82 / 2e-17 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.010G191500 [exp] 77 / 5e-15 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 73 / 2e-13 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 72 / 5e-13 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 68 / 1e-12 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 68 / 8e-12 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 67 / 2e-11 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 57 / 2e-08 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036900 [exp] 53 / 3e-07 AT4G33280 256 / 5e-83 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10039303 pacid=23175656 polypeptide=Lus10039303 locus=Lus10039303.g ID=Lus10039303.BGIv1.0 annot-version=v1.0 ATGGCGGAACAAGAAGAAGGAGAAGAAGATGGTAGCGAGCTGCGGTATTACAAGGTTACAGTGCCTCGTTTCGCACTCATCCTCCTCCTCGACCCATTCC GTAAAGGAAAGCTGAAACTTCCAGAAGACTTTGCGGAAGAGCATGGATCCGAGCTGGCAAATGAGGTACTCCTCAATCTTCCAAACGGAGCAGAATGGCC GGTCAGCGTGGTTAAAAGTGGCCGGAAGAAGATATGGTTCGACAACGGTTGGACAAAATTTGCCAAGTTCTACTCTCTCGAACCAACTCATTTCATGGTT TTCCAGCTGGCTGACCGTAGCCATTTCAATGTGATGATTTTTGATACCTCTGCAACCGAGATTAATTACTCCAAGAAGAAATGTATTGCCAATGTTGAGC CTGAAACTAATGAAGCTGTGGAAAGGCACCCTCCCTCTTCCTCAAAAGCCCAAGGAACTGCAAGTGGTATGAAAGCAGATCGAAATCGAAGCTCCAATCT CCGGAGGCCGAAACCATTGACAGCTGACAAGGAAGCTAGTGGAATACTTGGCAAAGCTAATGCTGTGTTTGAATCTGAAAATCCCTCCTTTACGGTTGTT ATGCAGCAAACACACCTCATTCATGGAAATAGACTGAATGTACCTGTCGATTTTTGGGAGACAAATTTCGTAGAGAACCGTGGAGACATCTTCCTGCAGC TTACGAATGTTGGAGTCTGGAAGGGTGAGTACCTTGTCATGGATTATGGCTATACGAAGAGAGCTTATTTGGAAGCAAAATCTTGGGGTTCGTTCGCACG AGCCAACTATTTGAGAGTTGGCGATAAGTGCGCTTTTGAGCTGGTGGAAGATGGCAATGCGGCTAGATTCAATGTGGTCATTTTCCGGACTTCTCCTTGT CGGGTTGGGAAAGAACCAACCACTGTGATTCCTGCAACTGAATCACACTTAACATCTCCCCGACCTATTAAGCTGAGAAGAAGAATTGGTGTGGGAAGAA CTGCTAGGGCTTCTAAAGGTCAAAATCAAAGCAGCGCTCCTCGTAGAGCCAAGAAAGCTGGTTTTCTTGCAAGAGCCAAGGCTGTTTTCGAATCTGACAA CCGTTACTTTATGGTAAACATGAAGCCATCGTATATCGGCCCTGGTACGAGACTGTATGTTCCGGCCAAGTTTGTTGAGACGAATTTCGTGAACCAATGC GGAGATATCGTACTCCAAGTCCCTGGTGTAGGAGGAGAATGGACAGTTAAGTATCTCGTCAGAGGTTCTGGTAATTTGAAGAGAGCTGTTCTCCAAACCG AGTCCTGGACGTCATTTGCAGAGGACACCGGTTTAAAAGTTGGCGATGTGTGTGCATTTGAGCTGGTGGAATTTGACACTATGCCTAGATTGAATGTGGT CATTTTCCGAGCTTCCCGAGATGCGAATCGCTGCCATCGATCCGGGACTGGACCAACGACCAAAGCGACAACCTCCAAGAAATCAGGCTGTACCAGAAAA TCAGAGAGACATGAACCATCTCATGGAAATACAGGCAAAGAAAGGGAAATATCATCATCGGCTGCTTTAGAAGCTGCCAATGCCTTCACCTCAAATGAGC CATCCTTCAAAACAGTTGTGACATATCCTCATCTAACCAGGGGGCGGCCGTATATACCAGAGGAGTTTTTGAAGTATATGAAGGAGGGCAGTCGTAAAAT GAAGTTATATGTCGCATCCAAATCATGGGAAGTGACGATTTGCAGATATAAGGACAAGATGAGGGCAAAGAGTAGGGTGTTCATGAATGGAGGATGGCGT AAATTCGCACGAGGAAATAAACTGGTAGCCGGAAATGTATGTGTTTTCGAGCTCATCGAGGGTGAAGAGGAGGATGATGCAACAGTCAGTGCAGTGGTAA GTGTGCGTATTTTCAGAGGGTGA
AA sequence Show only first row Show all	>Lus10039303 pacid=23175656 polypeptide=Lus10039303 locus=Lus10039303.g ID=Lus10039303.BGIv1.0 annot-version=v1.0 MAEQEEGEEDGSELRYYKVTVPRFALILLLDPFRKGKLKLPEDFAEEHGSELANEVLLNLPNGAEWPVSVVKSGRKKIWFDNGWTKFAKFYSLEPTHFMV FQLADRSHFNVMIFDTSATEINYSKKKCIANVEPETNEAVERHPPSSSKAQGTASGMKADRNRSSNLRRPKPLTADKEASGILGKANAVFESENPSFTVV MQQTHLIHGNRLNVPVDFWETNFVENRGDIFLQLTNVGVWKGEYLVMDYGYTKRAYLEAKSWGSFARANYLRVGDKCAFELVEDGNAARFNVVIFRTSPC RVGKEPTTVIPATESHLTSPRPIKLRRRIGVGRTARASKGQNQSSAPRRAKKAGFLARAKAVFESDNRYFMVNMKPSYIGPGTRLYVPAKFVETNFVNQC GDIVLQVPGVGGEWTVKYLVRGSGNLKRAVLQTESWTSFAEDTGLKVGDVCAFELVEFDTMPRLNVVIFRASRDANRCHRSGTGPTTKATTSKKSGCTRK SERHEPSHGNTGKEREISSSAALEAANAFTSNEPSFKTVVTYPHLTRGRPYIPEEFLKYMKEGSRKMKLYVASKSWEVTICRYKDKMRAKSRVFMNGGWR KFARGNKLVAGNVCVFELIEGEEEDDATVSAVVSVRIFRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	0	1
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Lus10004720 [exp]	1.0	0.9341
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016996 [exp]	2.2	0.9032
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10041313 [exp]	4.1	0.8707
AT1G44130			Eukaryotic aspartyl protease f...		Lus10018148 [exp]	4.7	0.8859
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	4.9	0.9133
AT1G31040			PLATZ transcription factor fam...		Lus10036226 [exp]	6.0	0.8874
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10036723 [exp]	6.3	0.8867
AT3G09510			Ribonuclease H-like superfamil...		Lus10000349 [exp]	8.4	0.8937
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10023295 [exp]	8.9	0.9069
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030814 [exp]	12.0	0.8326

Compare expression of checked genes

Lus10039303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.