Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52860 435 / 1e-149 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT4G25750 422 / 2e-144 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT5G19410 282 / 1e-89 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT2G13610 218 / 3e-65 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G53270 216 / 1e-64 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT3G55090 152 / 1e-40 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G53510 142 / 5e-37 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT2G37360 141 / 8e-37 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT2G39350 139 / 5e-36 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT5G13580 132 / 1e-33 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027545 [exp] 620 / 0 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 284 / 4e-90 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 278 / 6e-88 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 273 / 4e-85 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 264 / 1e-82 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 170 / 3e-47 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10029905 [exp] 168 / 2e-46 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 151 / 4e-40 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10030306 [exp] 139 / 9e-38 AT5G13580 573 / 0.0 ATP-binding cassette G6, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G027600 [exp] 448 / 1e-154 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.009G070100 [exp] 281 / 3e-89 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 249 / 3e-77 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 239 / 2e-73 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 238 / 6e-73 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 226 / 5e-68 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 212 / 9e-63 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 152 / 2e-40 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 147 / 1e-38 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 144 / 6e-38 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Lus10039304 pacid=23175625 polypeptide=Lus10039304 locus=Lus10039304.g ID=Lus10039304.BGIv1.0 annot-version=v1.0 ATGATCGATCGTGTCCTTCTGTTACGTAAAGGAAATGTCGTTCATTACGGATCGCTTCCTTCTTTGGAGAGTTACTTACTACATAAGGGATTCACTGTTC CTCACCAGCTTAATGCTCTTGAATATGCCATGGAGATCATCGGCCAGCTGCCGCCTGATGATGATGCTACGGTTGTCTCTCCCTCACCTGATCAAATCCC TCCGAATGATGATCGTGGTTGTGACAACGGCGGCGCCGTTTTGATCAAGTATAGAAGCTCCCGGATCCATGAGATTTCAGTCTTGCATTCCAGGTTATGG AAGATTATTTTTCGAACGAAACAGCTGCTCCTGACCAACACGATCGAAGCATTAGTCGTGGGGCTCGTGCTCGGTACGATCTACATCAACATAGGAATAA ACAAACAAGGAATCGAAAAACGTTGCGGCCTCTTTGCCTTCACCCTAACATTCCTCCTCTCCTCCACGACCGAAACCCTACCGATATTCATCAACGAGCG TCCCATCATCCTCCGAGAAGCATCCGGCGGCCTCTACCGAATCTCCTCCTACGTACTAGCCAACACATTGGTCTTCCTTCCTTACTTCCTTGTCGTCTCC ATCATCTACTCGGTTTCGGTCTACTTTCTGGTGGGACTTTGCGCGACCTGGCAGGCGTTCGCGTACTTTCTCGTTGTAGTATGGATCATTTTGGTTATGG CGAACTCGTTCGTCCTGTTTTTAAGCTCGGTAGCCCCCAATTACATCGCGGGGACCACGTTGGTCACCGTGATTCTGGCTGGGTTTTTCCTCTTCTCGGG ATACTTCATATCGGAGTCGAGTATGCCCAAGTACTGGCTGTTCATGCATTACATGTCGATGTACAAATATGCCCTTGATGCGCTTCTTGTCAACGAGTAT TCTTGTCATGTGAATGAGTGCTTCATTTGGTATGGTGGTGAGGGTAGTAGTGGAATTGGCGCTGCTGCTTGCGTGGTTACGGGTGCTGACGTGTTGAAGC AGAAGGCGATCGGGGAGAAGCTGAGGTGGAGGAATGTCTACGTGTTGATTGGGTTCTTTGTCTTTTACCGCTTGCTTTGCTTGGTGGCGTTGACCAGAAG GATTTCCAGGTCCAAAAAATAA
AA sequence Show only first row Show all	>Lus10039304 pacid=23175625 polypeptide=Lus10039304 locus=Lus10039304.g ID=Lus10039304.BGIv1.0 annot-version=v1.0 MIDRVLLLRKGNVVHYGSLPSLESYLLHKGFTVPHQLNALEYAMEIIGQLPPDDDATVVSPSPDQIPPNDDRGCDNGGAVLIKYRSSRIHEISVLHSRLW KIIFRTKQLLLTNTIEALVVGLVLGTIYINIGINKQGIEKRCGLFAFTLTFLLSSTTETLPIFINERPIILREASGGLYRISSYVLANTLVFLPYFLVVS IIYSVSVYFLVGLCATWQAFAYFLVVVWIILVMANSFVLFLSSVAPNYIAGTTLVTVILAGFFLFSGYFISESSMPKYWLFMHYMSMYKYALDALLVNEY SCHVNECFIWYGGEGSSGIGAAACVVTGADVLKQKAIGEKLRWRNVYVLIGFFVFYRLLCLVALTRRISRSKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039304 [exp]	0	1
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	1.4	0.9509
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039305 [exp]	2.0	0.9314
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10025058 [exp]	2.0	0.9479
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	4.6	0.9350
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Lus10000315 [exp]	7.4	0.9100
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10028930 [exp]	7.5	0.8825
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Lus10034487 [exp]	7.9	0.9215
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	8.9	0.9290
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10002326 [exp]	9.5	0.9062
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	10.4	0.9117

Compare expression of checked genes

Lus10039304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.