Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52870 50 / 9e-07 MAKR5 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G027500 [exp] 109 / 2e-27 AT5G52870 90 / 4e-20 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein Potri.012G035700 [exp] 105 / 6e-26 AT5G52870 115 / 2e-29 MEMBRANE-ASSOCIATED KINASE REGULATOR 5, unknown protein Potri.003G133500 [exp] 42 / 0.0005 AT1G64080 147 / 2e-39 MEMBRANE-ASSOCIATED KINASE REGULATOR 2, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039306 pacid=23175462 polypeptide=Lus10039306 locus=Lus10039306.g ID=Lus10039306.BGIv1.0 annot-version=v1.0 ATGGATGTTCTTTACTTTCTCAAGCTCCTCAGACCCACAACAAACATCCTTAACCCCAAAGAACTCAACCAAGATGCTGACTTTGTAAACGCCAAATCCT CATTCAGCTTGGAAACTCATGACTACGCCGAAGAAGACGAGGAAGAAGACTCTTTCTTCGAATTGGAGCTCGCCGTCAATGGCGTCCTCGTCGGCGGCGG CTCCAAACCCAAAGTCGAACCGAAACAATCACTACCCAAAAGAAAGATCCTCCCAATCGAGCAACCCATTTCCTCTGCCAACAAGCCCAACCAATCCCCG ATTTCCATCCTGAAATCCGCTCCCCGGTTCCGGATCCTCGCGTTCAAGAAGTCAAAGTCAATGCCTGCTCAGAAAACAGAGGAGGAGGAGAAGGAAAGCG ATACAGCGTCGTCCAAGTCGCTGAATCTGGGCAGGAACAACAGCTTGAGGAAGCAGATCTGGAATGAAACGGCGTCGGAGCTGGAGGACGATACGGCGTC GTCTAGAAGGTTTCCTAAAGAGATTGTCCACAAGTACTTGAAGCTAATCAATCCGCTTTACTTTAAGGTCAAGAGGTCGGAATGCGAGAGGATGAAGTTC GCCGCCGCCGCCGAGCTGATGGAATACAGAGCGCCATTCTTCACTGCAAGAGATCTTTCAATTCTTCCAGAGGCTTGGCATTTTAAATTAAAGAATCGGG TTTTATCAGGACCCGCCCAGTCAAACCCATTAAAAAACCCATTTGATTCGGATTTCGGACGGGGCCGGGCAAACCCGGAAGTGGTGATTAAACGGGGATG GGTCGGAGCCGGATTTCAGACTATCCAACCCGTCCCCGTCCGGAATTGCAACCCTTCGGATGATTTGCGGGATCATTGTGTGGGTTGA
AA sequence Show only first row Show all	>Lus10039306 pacid=23175462 polypeptide=Lus10039306 locus=Lus10039306.g ID=Lus10039306.BGIv1.0 annot-version=v1.0 MDVLYFLKLLRPTTNILNPKELNQDADFVNAKSSFSLETHDYAEEDEEEDSFFELELAVNGVLVGGGSKPKVEPKQSLPKRKILPIEQPISSANKPNQSP ISILKSAPRFRILAFKKSKSMPAQKTEEEEKESDTASSKSLNLGRNNSLRKQIWNETASELEDDTASSRRFPKEIVHKYLKLINPLYFKVKRSECERMKF AAAAELMEYRAPFFTARDLSILPEAWHFKLKNRVLSGPAQSNPLKNPFDSDFGRGRANPEVVIKRGWVGAGFQTIQPVPVRNCNPSDDLRDHCVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039306 [exp]	0	1
AT5G57100			Nucleotide/sugar transporter f...		Lus10020017 [exp]	1.4	0.9071
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	4.6	0.8880
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10034747 [exp]	6.7	0.8685
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10016733 [exp]	9.2	0.8487
AT2G39870			unknown protein		Lus10004675 [exp]	10.1	0.8746
AT1G54460			TPX2 (targeting protein for Xk...		Lus10042543 [exp]	10.4	0.8488
AT1G23220			Dynein light chain type 1 fami...		Lus10034609 [exp]	11.6	0.8286
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Lus10026036 [exp]	11.9	0.8909
AT3G53540			unknown protein		Lus10024434 [exp]	14.3	0.8172
AT1G75580			SAUR-like auxin-responsive pro...		Lus10012432 [exp]	16.4	0.8668

Compare expression of checked genes

Lus10039306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.