Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64090 304 / 9e-105 RTNLB3 Reticulan like protein B3 (.1.2) AT5G41600 300 / 3e-103 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT2G46170 296 / 9e-102 Reticulon family protein (.1.2) AT4G23630 294 / 2e-100 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT4G11220 292 / 1e-99 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT3G61560 264 / 7e-89 Reticulon family protein (.1.2) AT3G10260 213 / 4e-69 Reticulon family protein (.1.2.3) AT4G01230 185 / 5e-58 Reticulon family protein (.1) AT3G18260 183 / 2e-57 Reticulon family protein (.1) AT3G10915 126 / 3e-35 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027548 [exp] 446 / 6e-161 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10027546 [exp] 440 / 3e-158 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10014948 [exp] 399 / 5e-142 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10038833 [exp] 391 / 5e-139 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10032313 [exp] 298 / 4e-102 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10041080 [exp] 281 / 9e-96 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10036405 [exp] 280 / 3e-95 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2) Lus10028753 [exp] 298 / 1e-94 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10017533 [exp] 270 / 4e-91 AT1G64090 303 / 9e-104 Reticulan like protein B3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035600 [exp] 321 / 3e-111 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.001G097700 [exp] 316 / 1e-109 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 308 / 3e-106 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 300 / 2e-103 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 294 / 8e-101 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 283 / 9e-97 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.002G055600 [exp] 216 / 3e-70 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 213 / 3e-69 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.013G160900 [exp] 187 / 6e-59 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.015G044300 [exp] 166 / 6e-51 AT3G18260 251 / 1e-84 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10039307 pacid=23175499 polypeptide=Lus10039307 locus=Lus10039307.g ID=Lus10039307.BGIv1.0 annot-version=v1.0 ATGGCGGACAACGTCAGCCACCACGATTCTCTGGTGGACAAGATCACCGAGAAGATCACCGGCCACCATGACGGATCCTCCTCTTCCTCCTCCTCCGATT CCGACGACGACAAGCCGTCCAAAGTTGAGGCCGTCAAATCCAAGATTTACCGTCTCTTCAGCAGAGACAAGCCCGTCCACAAGGTCTTCGGCGGCGGCAA ACCTGCTGATGTTCTTCTGTGGAGGAACAAGAAAGTTTCAGGAGCAGTGGTTGGAGTTGCTACTGCAATCTGGATTCTGTTTGAATTGCTTGAATATCAT CTGATCACCCTAGTTTGTCACTTGTCGATTCTTGCTCTGGCCATACTCTTCCTTTGGTCCAACGCTTCCACCTTCATAAACAAGTATGGTATTTCTATTC TCTGTCTAACGATGATTCCTGAAGTTGTGATCCCTGAGAAGTGCATCCTTGAAATTGCATCTGCATTGAGAATCCAATTCAACCGTGGCGTCACAGTTCT TCGCGAGCTTTCATCCGGGAGAGATATCAAGAAGTTTCTGATTGTGATTGCTGGGTTGTGGTTCATATCCATCATCGGAAGTTGCTGCAACTTCTTGACC TTGTTCTACATAGCGTTTGTGTTGCTGCACACTCTACCCGTGCTCTATGAGAAATATGATGACAAGGTCGATGCATATGCCGAGAAAGCGATGATCGAGC TCAAGAAGCAGTATGCAGTCTTTGATGCCAAAGTTTTGAGTCAAATTCCCAAAGGTCCACTGAAGAAGAAAGATTAG
AA sequence Show only first row Show all	>Lus10039307 pacid=23175499 polypeptide=Lus10039307 locus=Lus10039307.g ID=Lus10039307.BGIv1.0 annot-version=v1.0 MADNVSHHDSLVDKITEKITGHHDGSSSSSSSDSDDDKPSKVEAVKSKIYRLFSRDKPVHKVFGGGKPADVLLWRNKKVSGAVVGVATAIWILFELLEYH LITLVCHLSILALAILFLWSNASTFINKYGISILCLTMIPEVVIPEKCILEIASALRIQFNRGVTVLRELSSGRDIKKFLIVIAGLWFISIIGSCCNFLT LFYIAFVLLHTLPVLYEKYDDKVDAYAEKAMIELKKQYAVFDAKVLSQIPKGPLKKKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10039307 [exp]	0	1
AT4G11220		RTNLB2, BTI2	Reticulan like protein B2, VIR...		Lus10027546 [exp]	1.0	0.8281
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10027548 [exp]	10.3	0.7183
AT2G44940	AP2_ERF		Integrase-type DNA-binding sup...		Lus10007799 [exp]	37.4	0.6088
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Lus10041965 [exp]	41.0	0.5958
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10002715 [exp]	64.7	0.5724
AT1G15960		ATNRAMP6, NRAMP...	NRAMP metal ion transporter 6 ...		Lus10041652 [exp]	128.9	0.5511
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10031769 [exp]	132.3	0.5400

Compare expression of checked genes

Lus10039307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.