Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52880 208 / 2e-66 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027547 [exp] 522 / 0 AT5G52880 208 / 1e-66 F-box family protein (.1) Lus10027549 [exp] 510 / 0 AT5G52880 207 / 2e-66 F-box family protein (.1) Lus10037278 [exp] 45 / 4e-05 AT5G45360 352 / 1e-121 F-box family protein (.1) Lus10035689 [exp] 44 / 6e-05 AT5G45360 351 / 6e-121 F-box family protein (.1) Lus10022369 [exp] 40 / 0.0008 AT5G45360 40 / 2e-04 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035500 [exp] 254 / 2e-84 AT5G52880 199 / 1e-62 F-box family protein (.1) Potri.010G154500 [exp] 42 / 0.0003 AT4G12560 139 / 7e-37 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.016G012700 [exp] 42 / 0.0004 AT4G12560 143 / 3e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.004G236200 [exp] 40 / 0.001 AT5G45360 349 / 2e-120 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10039308 pacid=23175466 polypeptide=Lus10039308 locus=Lus10039308.g ID=Lus10039308.BGIv1.0 annot-version=v1.0 ATGTCGAATCCAGTCGACCGATACCGGGAATTGCGATACGAAGAAGGACTGGCGAACATCCACCGTTACCCGATCGCCTGCAAAGAGCTCAGCTCTATTC TCAGGGCAGCTTACTCCGACCTCCCTAAGAATCTCCATTCCATACTCTTCGACGACATTCTCACTGCCTTCCGGCTTCTTCCTGAAATGCAAACACAGAG TGCTGTTTCTGCAGCACATCTTTTATATCAAAGTGCTGAAGCTAAACTTCCTAAGCAGAAGAAGATTTTGGCAGTCTCGGAGTTCAAGCGTGCCAAGGTT GCTCATAAGCGGCGTTCCAAAGCTTTTCGCAAGGAAGAAATTATAGCAGAGCTTCCAGAAGACGTACTTGCTCACATCTTCAGCTTCCTCGACACGCAGT CTTTAGCAACGATGGGGAATGTCTGCCGGCCATGGAATGCTGCAGCTAGTAACAACCTCCTCTGGCAAGCTCACTATGCTAAAATTTTCGGGAGCGATAC CAATTCGAAAGGGCAGAAAATGACACGCGACAGTGGCAGCAGTATTGACTGGAAAGAGGCCTTTAAAACAACATACTTTGCTAGTAAGCCCGACAGATTA GCATCTAACCGGGGATACTGCCACAGTTGCAAAGCAGTAGTTTGGCTTGCTGGTATGGAATGCTGCAATGAAGCAAATTGTTCTACGCGAAAGCAATCGA AGAACACTGGAGTCATACACATTACCTCTCGTCAGGTTGTGGAATATCTGTTGCATGGCTCTTCGTCGTTATTTTTGTCGTCGAAGGACAGTGATAGTGA TTCGGAGGACCTCACCATGTGGGCTTACGATTTTAGTTCTTATTAG
AA sequence Show only first row Show all	>Lus10039308 pacid=23175466 polypeptide=Lus10039308 locus=Lus10039308.g ID=Lus10039308.BGIv1.0 annot-version=v1.0 MSNPVDRYRELRYEEGLANIHRYPIACKELSSILRAAYSDLPKNLHSILFDDILTAFRLLPEMQTQSAVSAAHLLYQSAEAKLPKQKKILAVSEFKRAKV AHKRRSKAFRKEEIIAELPEDVLAHIFSFLDTQSLATMGNVCRPWNAAASNNLLWQAHYAKIFGSDTNSKGQKMTRDSGSSIDWKEAFKTTYFASKPDRL ASNRGYCHSCKAVVWLAGMECCNEANCSTRKQSKNTGVIHITSRQVVEYLLHGSSSLFLSSKDSDSDSEDLTMWAYDFSSY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52880			F-box family protein (.1)		Lus10039308 [exp]	0	1
AT2G02760		ATUBC2	ubiquitin-conjugating enzyme 2...		Lus10030786 [exp]	2.4	0.8306
AT1G53400			Ubiquitin domain-containing pr...		Lus10005423 [exp]	3.9	0.8212
AT1G12450			SNARE associated Golgi protein...		Lus10006674 [exp]	6.0	0.8287
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10034055 [exp]	7.6	0.8359
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	7.7	0.8233
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	9.9	0.8174
AT1G67620			Lojap-related protein (.1)		Lus10015822 [exp]	13.2	0.8200
AT1G55170			unknown protein		Lus10034321 [exp]	14.9	0.8028
AT4G12590			Protein of unknown function DU...		Lus10027326 [exp]	16.2	0.8205
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	17.4	0.8001

Compare expression of checked genes

Lus10039308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.