Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22470 210 / 6e-64 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 199 / 4e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 200 / 5e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 199 / 6e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 199 / 8e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62930 196 / 2e-58 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12620 195 / 2e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 195 / 4e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 194 / 5e-58 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16640 188 / 2e-56 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024962 [exp] 346 / 2e-117 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022861 [exp] 342 / 4e-115 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014242 [exp] 325 / 2e-110 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014247 [exp] 328 / 1e-109 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003433 [exp] 326 / 1e-108 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 323 / 8e-108 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 321 / 6e-107 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008593 [exp] 317 / 2e-105 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10009201 [exp] 293 / 2e-99 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G047400 [exp] 239 / 4e-76 AT1G63080 341 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 239 / 3e-75 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 238 / 8e-75 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 238 / 1e-74 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074700 [exp] 234 / 4e-74 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 234 / 5e-73 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 233 / 2e-72 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 232 / 4e-72 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 230 / 1e-71 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 229 / 2e-71 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039310 pacid=23175580 polypeptide=Lus10039310 locus=Lus10039310.g ID=Lus10039310.BGIv1.0 annot-version=v1.0 ATGAAGGTGTTAGAAATGAATGCCGTTCCTAATGTCGTCACCTTTAACATTTTGATTGACTCTTCTTGCAAAGAGGGAAGGGTTCTTGAGGCTAAAGTTA TACTTAAAAAAATTATTCAAAGAGGGTTGCATCCAACTATCTTGACATTCAATTCATTGCTTGATGGGTATTGTTTGCGTAATGAATTAGACAAAGCTCA TAAATTATTTATTTTCATGGTCAGTAAAGGATGCAAGCCTAATGTTCATACATATACTATCATGATCAATGGATATTGTAAGAGTGAAAGGTTGGGTGAG GCCAAAGAGTTACCGAATGATATGCTTGAAAAGGGTTTAGCTCCGAACACTGTTACATACAGAGCTCTTCTGGATGGGTTTTGCCGAGCAGGGAGGCTCA AGGCTGCGCAAACACTTTTCAAGAAAACGTGTGATCAAGGACAAATTCCAGGTGTCGTGACATGCGGCAGTTTGCTAAGTGGCTGGTGCGGAGGAGGTAA TATTGACGAGGCTATAGCTCTATTTCAACAAATGGAGAGTAGTTGGTTGAAGCCTAATGTTGCGGTCTATAATATTCTTATTGATGGTATGTGGAAAGCA GGAAGGGTTAAGGAAGCTAGAGACATGTTTTCTAAGCTCTCTCAAAATGAGAGTTTACAACTTGATATCCGCACATATAACTTAGTAATTGATGGACTTT GTAGACATGGTTTGGTTGATGAATATGATCTGTTCAGAACAATGGAGAAGAGTATTTTTCACTAG
AA sequence Show only first row Show all	>Lus10039310 pacid=23175580 polypeptide=Lus10039310 locus=Lus10039310.g ID=Lus10039310.BGIv1.0 annot-version=v1.0 MKVLEMNAVPNVVTFNILIDSSCKEGRVLEAKVILKKIIQRGLHPTILTFNSLLDGYCLRNELDKAHKLFIFMVSKGCKPNVHTYTIMINGYCKSERLGE AKELPNDMLEKGLAPNTVTYRALLDGFCRAGRLKAAQTLFKKTCDQGQIPGVVTCGSLLSGWCGGGNIDEAIALFQQMESSWLKPNVAVYNILIDGMWKA GRVKEARDMFSKLSQNESLQLDIRTYNLVIDGLCRHGLVDEYDLFRTMEKSIFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22470			Pentatricopeptide repeat (PPR)...		Lus10039310 [exp]	0	1
AT1G59171			Inositol-pentakisphosphate 2-k...		Lus10033202 [exp]	20.4	0.8286
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Lus10041355 [exp]	39.2	0.8188
AT1G47670			Transmembrane amino acid trans...		Lus10025113 [exp]	65.1	0.7673
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10029453 [exp]	164.3	0.7637

Compare expression of checked genes

Lus10039310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.