Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06430 358 / 7e-123 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 231 / 3e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 213 / 4e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39620 122 / 4e-32 ATPPR5, EMB2453 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G02860 118 / 4e-30 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 111 / 7e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74850 110 / 1e-27 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT1G12775 97 / 6e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G59040 95 / 5e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G31400 94 / 1e-21 GUN1 genomes uncoupled 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027552 [exp] 457 / 4e-162 AT3G06430 501 / 1e-175 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000862 [exp] 380 / 2e-131 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 372 / 3e-128 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022787 [exp] 225 / 1e-70 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 222 / 2e-69 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024893 [exp] 192 / 2e-58 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035850 [exp] 114 / 7e-29 AT4G39620 579 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10022401 [exp] 99 / 3e-23 AT5G01110 281 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 98 / 6e-23 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G153900 [exp] 359 / 2e-123 AT3G06430 717 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G098700 [exp] 355 / 1e-121 AT3G06430 692 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G243600 [exp] 244 / 3e-78 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 212 / 4e-66 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G082400 [exp] 125 / 3e-33 AT4G39620 625 / 0.0 EMBRYO DEFECTIVE 2453, A. THALIANA PENTATRICOPEPTIDE REPEAT 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.002G193900 [exp] 104 / 2e-25 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.001G297300 [exp] 104 / 3e-25 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 103 / 6e-25 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G118500 [exp] 102 / 1e-24 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.015G069100 [exp] 101 / 2e-24 AT1G74850 1268 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10039311 pacid=23175511 polypeptide=Lus10039311 locus=Lus10039311.g ID=Lus10039311.BGIv1.0 annot-version=v1.0 ATGCTGAAGCAGCAACCATTCTACAAGCCAAAAGAAGGCACCTACATGAAGCTCCTCATCCTGTTGGGGAAATCCGGCCAACCCGACCTTGCACACCAGC TGTTGGACAAAATGCTTCAACAGGGGATTCCACCCTCCCCTGAACCCTACACTTCCCTCCTCGCGGCCTATTCCCGCAGCGGCCTAATCGACAAGGCGTT CTCCATTCTCGAGTTAATGAAGTCCTTGCCGCAATGCCAGCCTGATGTCTTCACTTACAGCACAATTCTCAAAGCATGCGTCGACTCCTCTAGATTCGAT CTAATCGATTCGGTCTACCTGGAAATGAAACACCGCCTCATCCTCCCCAATACCGTCACCCGAAACATTGTACTCAGTGGATACGATAGGGCTGGTTTGT ACGACGAGATGGAAATGCTGATCAGTCGCACTGCCAAACCAGATTTATGGACTATGGATATCATCATTTCCATCTTCGGCAACAAAGGAGAAATTGAAAT CATGGAGAAATGGTGCAAGAAGTTTCGAGACTATGGGATCGAGCCGGATATTCGGACGTTCAACATCCTGATTGGATCGTATGGGAAGGTGAGGAGCTAC GAGAAGATGTCGTCGGTGATGGAGTATATGGGAATCCGGTGGAGTAGCTCCACTTACAACAATGTGATGGAGGCGTTTGCGGATGGAGGGGATGTGAAGA ACATGGAGTATACCTTCAACAAGATGGGGTGA
AA sequence Show only first row Show all	>Lus10039311 pacid=23175511 polypeptide=Lus10039311 locus=Lus10039311.g ID=Lus10039311.BGIv1.0 annot-version=v1.0 MLKQQPFYKPKEGTYMKLLILLGKSGQPDLAHQLLDKMLQQGIPPSPEPYTSLLAAYSRSGLIDKAFSILELMKSLPQCQPDVFTYSTILKACVDSSRFD LIDSVYLEMKHRLILPNTVTRNIVLSGYDRAGLYDEMEMLISRTAKPDLWTMDIIISIFGNKGEIEIMEKWCKKFRDYGIEPDIRTFNILIGSYGKVRSY EKMSSVMEYMGIRWSSSTYNNVMEAFADGGDVKNMEYTFNKMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10039311 [exp]	0	1
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	3.2	0.8409
AT5G24650			Mitochondrial import inner mem...		Lus10032959 [exp]	9.6	0.7775
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034868 [exp]	10.8	0.7682
AT2G40720			Tetratricopeptide repeat (TPR)...		Lus10027366 [exp]	12.1	0.8100
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	17.0	0.7758
AT1G06730			pfkB-like carbohydrate kinase ...		Lus10024866 [exp]	18.0	0.7850
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	23.2	0.7745
AT3G49990			unknown protein		Lus10015447 [exp]	25.8	0.7686
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	25.9	0.7482
AT5G23200			unknown protein		Lus10017393 [exp]	26.7	0.7211

Compare expression of checked genes

Lus10039311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.