Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52900 102 / 4e-26 MAKR6 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027554 [exp] 394 / 2e-138 AT5G52900 108 / 3e-27 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein Lus10036407 [exp] 59 / 3e-10 ND 37 / 0.010
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G035200 [exp] 155 / 6e-47 AT5G52900 145 / 3e-43 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein Potri.015G026600 [exp] 154 / 4e-46 AT5G52900 150 / 4e-45 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein Potri.014G091500 [exp] 81 / 3e-18 AT5G52900 72 / 4e-15 MEMBRANE-ASSOCIATED KINASE REGULATOR 6, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039313 pacid=23175470 polypeptide=Lus10039313 locus=Lus10039313.g ID=Lus10039313.BGIv1.0 annot-version=v1.0 ATGGAAACTTCTTCACAGCAGCAAAGGCCTCTCTCCATCGAGAGCTTCTCCTACAGCTGGTTAGTCAACCTCAAACCAGAAGATACCGCCGCCGGTGACA ACGACGACTACGAAGAGTCCTCTAATTCTTTCATCGAGATGGACCCACGTATGCCGCCTTCCAAGCGCTTCTTCCACCACGATTTCAACTTCGACTTCCC CGAACAGCCCCCTCCGATCGCTCTTCTCCACGCCGACGAGCTCTTTTCCGACGGCTACCTCATGCCTTTCTTCCTCTCCACCGACTCCTCCCCATTTACC AAAAAGTCCGAGACCAAGATCAGTAATTACGACGATGCCATTTTGTCGTCATCTAATCAGGACCATCATGATTACAACTCAGCAGCTAACCATCACCATC CCGACCCGGCCAGTTCGGGTCATCAGCCGGTTTTGGGCAGAATGAGGGCCCGGAGGTGCTCTTCTTTGAGGAGGTACGGGAAGCTCTCGAAGCGGATGTT TGAAAAGTATCTCGATTTCATTCGACGGAGATTTCACGGTGGTCGAGTTGTCAGCCTGAGATCAGCCAGTACAAGATCTGAGAAGTCGTCCAAAGTGAAT CCGGCCGAAGTAATTATAAATAATAATAATAATGGTAAAATGGGTGTGAGGAGATGGAGTTCGACGGCGGGAGAGGTGTCGCCGAGGATAAGTGTAGCGT ACTCGATCGGAGCGAGGAGATCGTCTTGTGACTCTGAGAGCTCTATTTACGAAGCGGTGCTTCATTGTAAAAGATCCATTCATGGTATGTAA
AA sequence Show only first row Show all	>Lus10039313 pacid=23175470 polypeptide=Lus10039313 locus=Lus10039313.g ID=Lus10039313.BGIv1.0 annot-version=v1.0 METSSQQQRPLSIESFSYSWLVNLKPEDTAAGDNDDYEESSNSFIEMDPRMPPSKRFFHHDFNFDFPEQPPPIALLHADELFSDGYLMPFFLSTDSSPFT KKSETKISNYDDAILSSSNQDHHDYNSAANHHHPDPASSGHQPVLGRMRARRCSSLRRYGKLSKRMFEKYLDFIRRRFHGGRVVSLRSASTRSEKSSKVN PAEVIINNNNNGKMGVRRWSSTAGEVSPRISVAYSIGARRSSCDSESSIYEAVLHCKRSIHGM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10039313 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014110 [exp]	1.4	0.7763
AT5G52900		MAKR6	MEMBRANE-ASSOCIATED KINASE REG...		Lus10027554 [exp]	2.4	0.8059
AT5G21050			unknown protein		Lus10019547 [exp]	6.5	0.7366
					Lus10038704 [exp]	34.1	0.7082
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10017615 [exp]	36.8	0.7057
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10003109 [exp]	39.3	0.6981
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	39.4	0.6875
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026138 [exp]	44.5	0.6946
AT2G33205			Serinc-domain containing serin...		Lus10011768 [exp]	45.6	0.6507
AT2G43610			Chitinase family protein (.1)		Lus10001772 [exp]	48.8	0.6978

Compare expression of checked genes

Lus10039313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.