Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14310 702 / 0 ATPME3 pectin methylesterase 3 (.1) AT1G53830 686 / 0 ATPME2 pectin methylesterase 2 (.1) AT5G53370 451 / 5e-153 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G43270 444 / 3e-151 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 445 / 1e-150 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 432 / 6e-146 ATPMEPCRA methylesterase PCR A (.1) AT4G02320 427 / 9e-145 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 420 / 4e-142 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 419 / 1e-141 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05620 411 / 3e-138 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003933 [exp] 698 / 0 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1) Lus10013344 [exp] 654 / 0 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10037458 [exp] 472 / 5e-163 AT3G14310 491 / 2e-170 pectin methylesterase 3 (.1) Lus10038917 [exp] 473 / 4e-162 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 454 / 9e-155 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 442 / 1e-151 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 445 / 3e-150 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 432 / 3e-146 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 427 / 8e-145 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G072800 [exp] 761 / 0 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 739 / 0 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.018G051400 [exp] 681 / 0 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.003G002650 [exp] 608 / 0 AT3G14310 598 / 0.0 pectin methylesterase 3 (.1) Potri.003G002800 [exp] 603 / 0 AT3G14310 592 / 0.0 pectin methylesterase 3 (.1) Potri.001G162600 [exp] 593 / 0 AT3G14310 551 / 0.0 pectin methylesterase 3 (.1) Potri.001G162500 [exp] 587 / 0 AT3G14310 541 / 0.0 pectin methylesterase 3 (.1) Potri.006G256700 [exp] 577 / 0 AT3G14310 587 / 0.0 pectin methylesterase 3 (.1) Potri.006G256600 [exp] 550 / 0 AT3G14310 548 / 0.0 pectin methylesterase 3 (.1) Potri.002G202500 [exp] 507 / 2e-175 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10039314 pacid=23175600 polypeptide=Lus10039314 locus=Lus10039314.g ID=Lus10039314.BGIv1.0 annot-version=v1.0 ATGGCCACATCAGCTTACTTTCTTACTCTCCTCAACCTGCTAATTATTATCCTCGCCAGTAGTACGAGTACATTCGTTGCTAGCACTCGGACGTATAGCT CGTTATCCGCCAGCCGCCGCACCGTCCTGACCTCGTCGTGCAGCAACACCAGGCATCCTGACCTATGCTTCTCCTCCCTCGCTTCTGCACCGGTCCATGT ATCGCTCAACACCCAGATGGACGTCATCAAGGCCTCCATTAACGTCACGTGCACCTCCGTCCGGCGTAACATTGCCGCCGTTAACAAAGCGTTGTCCACC AGGACAGACCTTACCCCACGCTCCAGGTCAGCACTGAAAGACTGTGTGGAGACAATGAGCACGTCACTAGACGAGCTCCACGTGGCGCTGGCTGAGCTGG ACGAATACCCAAACAAGAAATCGATAACCCGACACGCCGACGACCTAAAAACGTTACTAAGTGCAGCGATGACAAACCAAGAGACATGCCTTGACGGCTT CTCCCACGACGATTCCGAGAAGAAGGTCAGGAAAACGCTGGAGACCGGGCCGGTTCGTGTCGAGAAGATGTGCGGTAACGCGCTGGGGATGATCGTCAAC ATGACGGAGACGGACATGGCATCTGCTACTAACGCCGTCAATACGGAGGGGGGTAGCAGTGGGAGTTGGCCCATGTGGATGAAGGGTGGGGACAGGAGGC TGCTGCAGGCTGGAACCACGGTGACTCCGAACGTGGTGGTGGCGGCTGACGGAAGCGGGAAGTACAGGAGAGTGTCGGAGGCGGTGGCGGCGGCGCCGAG TAAGAGTAGCAAGAGGTATGTGATAAGGATAAAAGCTGGGATTTATAGGGAGAACGTGGAGGTTCCTAAGGATAAGACGAATATTATGTTCGTGGGAGAT GGAAGGAGTAATACTATTATTACTGGGAATAAGAATGTCGTTGACGGTTCGACCACTTTCAACTCTGCAACCGTTGCGGTGGTGGGACAAGGGTTCCTAG CAAGGGACATAACCTTCCAAAACACAGCAGGACCATCAAAACACCAAGCAGTAGCCCTCCGAGTCGGTGCTGACCTGGCAGCATTCTACCGGTGTGATTT CCTAGCTTACCAAGACACTCTCTACGTCCACTCCAACCGCCAGTTCTTCATCAACTGCCTCGTCGTCGGGACAGTCGACTTCATCTTCGGCAACTCCGCC GCCGTCTTCCAAAACTGCGACATCCACGCCCGCCGCCCCAACCCGGGGCAGAAGAACATGCTGACGGCGCATGGGAGGACCGACCCGAACCAGAACACGG GGATCGTCATCCAGAAGAGCAGGATCGCCGCCACCAGTGATCTACAGAGCGTCAAGGGTAGTTTCGGTACTTACCTTGGTCGGCCGTGGAAGGCGTACGC GAGGACGGTGATCATGCAGTCGACGATAAGCGACGTCGTGCACCCTGCTGGATGGCATGAGTGGGATGGCAACTTTGCCCTCAACACGCTCTTCTACGGT GAGCATAAGAACAGTGGGGCCGGGTCGGGTGTGAACGGTCGGGTCAAGTGGAAGGGTCATAAGGTAATTTCAAGTGATGCTGAGGCTGCCGGTTTTACTC CCGGTCGGTTCATTGCTGGTGGGTCCTGGTTGGGTTCTACTACTTTCCCCTTTACTCTTGGGTTGTAA
AA sequence Show only first row Show all	>Lus10039314 pacid=23175600 polypeptide=Lus10039314 locus=Lus10039314.g ID=Lus10039314.BGIv1.0 annot-version=v1.0 MATSAYFLTLLNLLIIILASSTSTFVASTRTYSSLSASRRTVLTSSCSNTRHPDLCFSSLASAPVHVSLNTQMDVIKASINVTCTSVRRNIAAVNKALST RTDLTPRSRSALKDCVETMSTSLDELHVALAELDEYPNKKSITRHADDLKTLLSAAMTNQETCLDGFSHDDSEKKVRKTLETGPVRVEKMCGNALGMIVN MTETDMASATNAVNTEGGSSGSWPMWMKGGDRRLLQAGTTVTPNVVVAADGSGKYRRVSEAVAAAPSKSSKRYVIRIKAGIYRENVEVPKDKTNIMFVGD GRSNTIITGNKNVVDGSTTFNSATVAVVGQGFLARDITFQNTAGPSKHQAVALRVGADLAAFYRCDFLAYQDTLYVHSNRQFFINCLVVGTVDFIFGNSA AVFQNCDIHARRPNPGQKNMLTAHGRTDPNQNTGIVIQKSRIAATSDLQSVKGSFGTYLGRPWKAYARTVIMQSTISDVVHPAGWHEWDGNFALNTLFYG EHKNSGAGSGVNGRVKWKGHKVISSDAEAAGFTPGRFIAGGSWLGSTTFPFTLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	0	1
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	2.8	0.9511
AT4G39900			unknown protein		Lus10024045 [exp]	4.2	0.9527
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	4.5	0.9584
AT1G52140			unknown protein		Lus10005478 [exp]	4.9	0.9291
AT3G01490			Protein kinase superfamily pro...		Lus10022227 [exp]	5.0	0.9285
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	5.7	0.9418
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	5.8	0.9556
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	6.2	0.9401
AT5G66440			unknown protein		Lus10041775 [exp]	6.3	0.9420
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	6.9	0.9478

Compare expression of checked genes

Lus10039314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.