Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24080 665 / 0 Protein kinase superfamily protein (.1) AT1G34300 422 / 1e-134 lectin protein kinase family protein (.1) AT2G19130 391 / 7e-123 S-locus lectin protein kinase family protein (.1) AT4G00340 349 / 4e-107 RLK4 receptor-like protein kinase 4 (.1) AT4G32300 349 / 5e-107 SD2-5 S-domain-2 5 (.1) AT5G35370 332 / 4e-100 S-locus lectin protein kinase family protein (.1) AT5G60900 308 / 1e-92 RLK1 receptor-like protein kinase 1 (.1) AT4G21390 280 / 2e-81 B120 S-locus lectin protein kinase family protein (.1) AT5G20050 258 / 3e-77 Protein kinase superfamily protein (.1) AT1G65790 258 / 1e-73 ARK1 receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006052 [exp] 412 / 2e-130 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10043391 [exp] 402 / 3e-127 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 391 / 1e-122 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10002917 [exp] 390 / 2e-122 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10013252 [exp] 381 / 3e-119 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10042266 [exp] 370 / 4e-115 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024195 [exp] 369 / 2e-114 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 351 / 1e-107 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 348 / 5e-107 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G026300 [exp] 1202 / 0 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.012G034901 [exp] 810 / 0 AT5G24080 520 / 0.0 Protein kinase superfamily protein (.1) Potri.018G027300 [exp] 437 / 2e-140 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.006G254600 [exp] 430 / 7e-138 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.013G115700 [exp] 428 / 6e-137 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.013G115800 [exp] 424 / 8e-136 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1) Potri.019G086200 [exp] 423 / 7e-135 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 418 / 5e-133 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 417 / 1e-132 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.010G103300 [exp] 391 / 2e-123 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10039315 pacid=23175529 polypeptide=Lus10039315 locus=Lus10039315.g ID=Lus10039315.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTATACTGTTGTCATCATGCACTACTCTGTTCTTCGTTCTGTTTTCGGCTGGGTTAATCCGCGGCTCGTTCGCTGCTGGCCGGATCGGGC TTGGTTCGAGACTGCTGGCTAGAGATCGTGATCAAGCTTGGATTTCGGACAATGGTACGTTTGCATTCGGTTTCACCGAGTCGTACGAGGATCCTGACCG CTTTCAGCTGGCTATTTGGTTCAATGATCTTCCTGGAGATCGCATCACTGTTTGGTCGCCTAATAGAAGCACTCCGGTGACAAAGAACGCAATCTTGGAA CTAAACACCGGCGGCAACCTAATCCTCACCGACAACCGCACTCCAATATGGATCTCAAACTCCTCCAGCATGGGAATCGAGTCCGCCTCCATGGAAGAAT CCGGAAACTTCATTCTCTTCAACGCTGTCGACCGCCCCGCCTGGCAGTCCTTCTCTCATCCTTCCGACACCCTCCTCCCTAACCAACCCCTAACCGCCTC CCTCGAACTAACCTCCCACGGCGGCGGCGGAAATTACTACTCCCTCAAAATGCTCCAGCAGCCGAACTCCCTAAGCCTCGCCCTAACCTACAACTTACCC GAATCCACCGGAGCCAATTACTCCTACTGGACCGGCCCGGATATATCTAACGTCACCGGCCAAGTCCTCGCCGTCGTCGACCAAGCCGGCAGTTTCGGAA TCGTCTACGGCGAATCCTCCAGCGGCGCCGTCTACGTCCACAAGAACGACAACGATTACAACGGACTCGCTTCCGCCACGAATCAATCGACTCGATCCGG AATCGGAGCGATCAGACGGCTGATTCTCGAAGGAAACGGAAACTTACGACTCTACCGATTCGACAACGACGTCAATGGATCTCGCCAGTGGGTCCCAGAA TGGGCCGCCGTTTCCAACCCGTGCGAAATCGCCGGGATCTGCGGGGACGGGATCTGTAATCTCGACCGGAGCAAAACCAACGCCACATGCAATCCTCTCC CTGGCGACAATTCTCATTCCTCCTCCAGATCTGGTTGCAATTCGACGGAATTTAAGATCGCGGCGGTGCAGCAGACCAGCTACTACTTCTCCGACGAGTA CTCCGTGGTGGCGAATTACAGCGACGTGCCGACGGTTTCCAAGTGCGGCGAAGCGTGTTTATCGGATTGCGAGTGCGTAGCTTCGGTTTACGGTTTGGAT GATGAAAAAGCGTACTGTTGGATTTTGAGGAGCGTGGATTTCGGTGGGTATGAGGATCCCGGTTCGACTCTGTTTGTGAAAGTCGGTGCGAATTGGACCG GTTCGCGTCGGAGCGGGACAGGGTCGGATCACGGTGCGGCGATCAGTAGCCGGACGGGGAAAGTGGTGGTGCTTCCGATTGTGCTGACTATGACTTTTTT GATAGCGATGCTGGGTTTTTTGTTGTGTTATAATGTTCGTCGGAAAAGGCTGTTGAAGAGGGAGATGGATCGTTCTCTGTTGGTTTCCGGTGCTCCGGTG GAGTTTACTTTCCGGGATTTGCAGATCCGCACCTGGAATTTCTCTCAGCTACTCGGCACAGGGGGATTTGGTAGTGTGTACAAAGGAAGTCTAGGAGATG GAACACTTGTAGCGGTAAAAAAATTGGATAAAGTTTTACCACACGGAGAGAAGGAATTTATCACTGAAGTAAACACAATTGGCTCTATGCACCACATGAA CTTGGTTCGTCTATGTGGATATTGCTCCGAGGGACCCCAACGGCTTCTGGTTTATGAGTTCATGAAAAACGGGTCGTTGGACAAGTGGATATTCCCGTTG TCGTCTTACGAGACACGAGACAAGCAGATCGTGATGTACTGGACGACGCGGTTCAGCATTGCGGTCGCGACGGCGCAAGGGATGGCGTACTTTCACGAAC AATGTCGGAACAGGATCATACATTGCGATATCAAACCGGAAAATATCTTGTTGGATGAGAATTTCTGTCCTAAAGTGTCGGATTTCGGGCTGGCAAAGCT TATGGGAAGGGAACATTCCCATGTTGTGACTATGGTTCGTGGGACAAGAGGGTACTTGGCTCCTGAGTGGGTAAGCAACCGGCCCATAACGGTGAAGGCA GATGTGTATAGTTATGGGATGTTGCTATTGGAAATCATTGGTGGGCGTAGGAATCTTGACATGTCCCTGGAAGCTGAGGACTTCTTCTTCCCTGGATGGG CTTTTAAGGCGATGATGACCGGGACGCACCTGAAAGCAGTGGACAGAAAGCTACTACTCGAGAGCCCAACATCATCAACGACGACGGTGGACGAAGATGA GGTTCTGCGGGCACTAAAGGTGGCGTTCTGGTGCATACAGGACGAGGTGTTCATGAGGCCGTCGATGGGAGAAGCGGTGAAGCTGCTGGAAGGATCGACG GCTGAGATTAAGATGCCACCGATGCCGCAGACGGTGCTTGAACTTATAGAGGAAGGACTGGAACATGTCTACAGGGCCATGAAAAGAGATCACTACTTCA ATAGTAATCATGATAATGATGATCAGTTGATAAGCAGCACTTTCACCGTCGATGATACGACCACCGGCCTTTCTGCGTCGCATGCTACTTGTAGTTACTC CACCATGTCGCCCAGATGA
AA sequence Show only first row Show all	>Lus10039315 pacid=23175529 polypeptide=Lus10039315 locus=Lus10039315.g ID=Lus10039315.BGIv1.0 annot-version=v1.0 MAASILLSSCTTLFFVLFSAGLIRGSFAAGRIGLGSRLLARDRDQAWISDNGTFAFGFTESYEDPDRFQLAIWFNDLPGDRITVWSPNRSTPVTKNAILE LNTGGNLILTDNRTPIWISNSSSMGIESASMEESGNFILFNAVDRPAWQSFSHPSDTLLPNQPLTASLELTSHGGGGNYYSLKMLQQPNSLSLALTYNLP ESTGANYSYWTGPDISNVTGQVLAVVDQAGSFGIVYGESSSGAVYVHKNDNDYNGLASATNQSTRSGIGAIRRLILEGNGNLRLYRFDNDVNGSRQWVPE WAAVSNPCEIAGICGDGICNLDRSKTNATCNPLPGDNSHSSSRSGCNSTEFKIAAVQQTSYYFSDEYSVVANYSDVPTVSKCGEACLSDCECVASVYGLD DEKAYCWILRSVDFGGYEDPGSTLFVKVGANWTGSRRSGTGSDHGAAISSRTGKVVVLPIVLTMTFLIAMLGFLLCYNVRRKRLLKREMDRSLLVSGAPV EFTFRDLQIRTWNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDKVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGPQRLLVYEFMKNGSLDKWIFPL SSYETRDKQIVMYWTTRFSIAVATAQGMAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKA DVYSYGMLLLEIIGGRRNLDMSLEAEDFFFPGWAFKAMMTGTHLKAVDRKLLLESPTSSTTTVDEDEVLRALKVAFWCIQDEVFMRPSMGEAVKLLEGST AEIKMPPMPQTVLELIEEGLEHVYRAMKRDHYFNSNHDNDDQLISSTFTVDDTTTGLSASHATCSYSTMSPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24080			Protein kinase superfamily pro...		Lus10039315 [exp]	0	1
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10006951 [exp]	2.2	0.9138
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10006574 [exp]	3.7	0.8888
AT1G80950			Phospholipid/glycerol acyltran...		Lus10032707 [exp]	4.2	0.8909
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10031085 [exp]	7.1	0.8917
AT5G62270			unknown protein		Lus10021682 [exp]	8.2	0.8713
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10012999 [exp]	8.4	0.8745
AT3G07425			unknown protein		Lus10020406 [exp]	10.2	0.8867
AT1G30440			Phototropic-responsive NPH3 fa...		Lus10038531 [exp]	10.6	0.9077
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030945 [exp]	14.4	0.8458
					Lus10017269 [exp]	15.2	0.8992

Compare expression of checked genes

Lus10039315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.