Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52920 902 / 0 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT1G32440 718 / 0 PKP3 plastidial pyruvate kinase 3 (.1) AT3G22960 360 / 8e-118 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT3G55650 276 / 2e-86 Pyruvate kinase family protein (.1) AT5G08570 271 / 2e-84 Pyruvate kinase family protein (.1) AT5G63680 269 / 1e-83 Pyruvate kinase family protein (.1) AT5G56350 267 / 3e-83 Pyruvate kinase family protein (.1) AT3G25960 265 / 3e-82 Pyruvate kinase family protein (.1) AT3G04050 264 / 1e-81 Pyruvate kinase family protein (.1) AT4G26390 262 / 4e-81 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011057 [exp] 745 / 0 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10000672 [exp] 742 / 0 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039396 [exp] 358 / 5e-117 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 358 / 5e-117 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 319 / 5e-102 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 305 / 2e-96 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10041003 [exp] 271 / 2e-84 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 270 / 7e-84 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 269 / 1e-83 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034000 [exp] 927 / 0 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.003G088700 [exp] 741 / 0 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.001G145300 [exp] 738 / 0 AT1G32440 846 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.008G159700 [exp] 363 / 5e-119 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.010G080700 [exp] 360 / 4e-118 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 303 / 4e-96 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 301 / 2e-95 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 272 / 8e-85 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 270 / 3e-84 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 270 / 3e-84 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00224 [flax] [poplar] PK Pyruvate kinase, barrel domain CL0151 [flax] [poplar] PF02887 [flax] [poplar] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Lus10039316 pacid=23175474 polypeptide=Lus10039316 locus=Lus10039316.g ID=Lus10039316.BGIv1.0 annot-version=v1.0 ATGGCGGCTCAAGTGGTAGCTACGAAATCCATCCACACTTCTCTGCCCTCCCCCGTCTCTTCTGGGTCGCTTCAAAACCGTGTCAAAAACCTTAAAGCTT CAAACTTTACCTCCAATGTCGGAGGACTTGTTCGTAGAGCCAACTCAACTATTTCCGCCGTAAAGACTGATGTAGTCATCCCCGTCTCACCCGAAGATGT CCCAAAGAGGGCGGAGAGGTTTACGGAGCTGCAGAAATTTGGGGACACGTCAGTGGGGGTGTGGTCTAAGCCAACGGTGAAGCGCAAGACGAAGATCGTG TGCACAATTGGTCCATCTACTAACACTAGGGAGATGATATGGAAACTGGCTGAGGCAGGAATGAATGTTGCTAGGTTGAACATGTCTCATGGGGATCATG CTTCCCACCAGAAAGTCATTGACTTGGTTAAGGAGTATAATGCTCAGTCCAAGGACAATGTCATTGCCATTATGATTGATACCAAGGGTCCCGAGGTTAG GAGTGGTGACTTGCCACAACCGATAATGTTGGCGCCTGGTCAGGAGTTCACTTTCACTATTCGTAGAGGTGTTGGGACTGGTGACTGTGTTAGTGTGAAC TATGATGATTTCGTCAATGATGTTGAAGATGGTGACATGCTTCTCGTTGATGGGGGGATGATGTCTCTGGTCGTGAAGTCAAAGACTGAAGATTCAGTGA AGTGTGAGGTTGTTGATGGGGGAGAACTGAAGTCTAGGCGTCATCTTAACGTTCGAGGAAAGAGTGCAACATTGCCTTCCATCACTGATAAGGACTGGGA TGACATAAAGTTTGGAGTGGACAACAAGGTTGATTTCTATGCTGTTTCATTCGTCAAAGATGCACAAGTCGTTCATGAGTTGAAGAACTATCTCAAGAGC TGCGGTGCAGATATTCACGTGATCGTAAAAATCGAGAGTGCTGATTCTATTCCTAATTTGCACTCGATAATCACAGCGTCAGATGGGGCAATGGTTGCAC GAGGCGATCTTGGTGCAGAGCTCCCAATTGAAGAAGTTCCACTTCTTCAGGAAGAGATAATCCGGTTATGCCGGGGCATGGGAAAAGCTGTTATTGTGGC TACAAATATGTTGGAAAGTATGATTGTTCATCCTACTCCAACCAGAGCGGAGGTGTCAGATATCGCCATTGCTGTTCGGGAAGGTGCAGATGCAGTGATG CTTTCTGGAGAAACTGCTCACGGAAAGTTCCCATTGAAGGCTGTAAAGGTTATGCATACTGTCTCGTTACGCACTGAAGCAACTTTATCTAGTGGGCCAA TGCCAGTTAATCTTGGACAAGCTTTCAAGAATCACATGAGTGAGATGTTTGCATACCATGCAACCATGATGTCGAACACTCTTGGGACGTCAATCGTTGT CTTCACCAGAACTGGCTTCATGGCTGTTTTGCTTAGTCATTATCGACCTTCAGGGACAATATTTGCTTTCACTAATGACAAAACGATACAGCAGAGGTTG GCAGTATATCAAGGAAATCATGGAATGATTAAGCAAGGTGAAGAGGTTGCACTCGTCCAAAGCGGGAAAAAACCCATCTGGCGGTTCCAGTCCACCCATA ATATTCAGGTACGTGAAGTATAG
AA sequence Show only first row Show all	>Lus10039316 pacid=23175474 polypeptide=Lus10039316 locus=Lus10039316.g ID=Lus10039316.BGIv1.0 annot-version=v1.0 MAAQVVATKSIHTSLPSPVSSGSLQNRVKNLKASNFTSNVGGLVRRANSTISAVKTDVVIPVSPEDVPKRAERFTELQKFGDTSVGVWSKPTVKRKTKIV CTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMIDTKGPEVRSGDLPQPIMLAPGQEFTFTIRRGVGTGDCVSVN YDDFVNDVEDGDMLLVDGGMMSLVVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITDKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKS CGADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRLCRGMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVM LSGETAHGKFPLKAVKVMHTVSLRTEATLSSGPMPVNLGQAFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAVLLSHYRPSGTIFAFTNDKTIQQRL AVYQGNHGMIKQGEEVALVQSGKKPIWRFQSTHNIQVREV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	0	1
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	1.4	0.9042
AT3G63430			unknown protein		Lus10024836 [exp]	4.7	0.9163
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	7.4	0.8866
AT5G26910			unknown protein		Lus10020689 [exp]	8.5	0.8645
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10035018 [exp]	8.5	0.8827
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	9.5	0.8856
AT2G44640			unknown protein		Lus10043347 [exp]	11.3	0.8887
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10029669 [exp]	11.4	0.8805
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	12.2	0.8642
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10042739 [exp]	17.8	0.9036

Compare expression of checked genes

Lus10039316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.