Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 280 / 1e-95 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027560 [exp] 369 / 1e-131 AT5G24090 295 / 4e-101 chitinase A (.1) Lus10040419 [exp] 246 / 5e-82 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10009215 [exp] 244 / 3e-81 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10023535 [exp] 236 / 4e-78 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10023534 [exp] 234 / 3e-77 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10009216 [exp] 233 / 6e-77 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10037985 [exp] 232 / 1e-76 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10040420 [exp] 230 / 7e-76 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10010137 [exp] 226 / 2e-74 AT5G24090 330 / 1e-113 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G024200 [exp] 297 / 2e-102 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.014G091700 [exp] 264 / 4e-89 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.002G165700 [exp] 261 / 4e-88 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.014G091600 [exp] 259 / 2e-87 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.012G033932 [exp] 259 / 3e-87 AT5G24090 397 / 7e-140 chitinase A (.1) Potri.002G242000 [exp] 255 / 8e-86 AT5G24090 387 / 3e-136 chitinase A (.1) Potri.012G033866 [exp] 244 / 1e-81 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.014G092800 [exp] 238 / 5e-79 AT5G24090 345 / 2e-119 chitinase A (.1) Potri.015G024100 [exp] 237 / 1e-78 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G024000 [exp] 237 / 1e-78 AT5G24090 337 / 2e-116 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10039317 pacid=23175702 polypeptide=Lus10039317 locus=Lus10039317.g ID=Lus10039317.BGIv1.0 annot-version=v1.0 ATGTGCCTCCGGAAAATATGCTTATTCTCGCTAGGCGGCGGCATTGGCAGCTACTCGTTATCATCCCAAGCAGATGCCAGAAATGTGGCTGAGTACCTGT GGAACAACTTCCTGGGTGGGCAGTCATCGTCACGTCCTCTAGGGGACGCTGTGCTGGATGGGATCGACTTCGACATTGAGCAATCGACTCAGCACTGGGA AGATCTTGCGCGGTACTTGTCAGCGTACAGCGGTCGTGGTAGGAAGGTGTATCTAGGAGCAGCTCCTCAGTGTCCTTTCCCAGATAGAAGCCTAGGAGCT GCTGTAAATACAGGTCTGTTTGACTATGTGTGGATCCAGTTCTATAACAACCCTCCTTGCCAGTACACTTCAGGAGATGTCAAAAGACTGTTGAGTTCGT GGAATCAATGGACGACATCGATTAACGCAGGGAAGATATTTCTCGGGTTGCCTGCTTCTACTCAGGCAGCTGGAAGTGGTTATATTCCTCCAGATGTGCT GACATCTCAAATTCTTCCACAGATAATGAATTCCCCCAAGTATGGAGGTGTTATGCTTTGGTCTAGGTATTGGGATCTTCAGAATGGATATACTTCATCC ATTCAGAAAAGTGTATGA
AA sequence Show only first row Show all	>Lus10039317 pacid=23175702 polypeptide=Lus10039317 locus=Lus10039317.g ID=Lus10039317.BGIv1.0 annot-version=v1.0 MCLRKICLFSLGGGIGSYSLSSQADARNVAEYLWNNFLGGQSSSRPLGDAVLDGIDFDIEQSTQHWEDLARYLSAYSGRGRKVYLGAAPQCPFPDRSLGA AVNTGLFDYVWIQFYNNPPCQYTSGDVKRLLSSWNQWTTSINAGKIFLGLPASTQAAGSGYIPPDVLTSQILPQIMNSPKYGGVMLWSRYWDLQNGYTSS IQKSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24090		ATCHIA	chitinase A (.1)		Lus10039317 [exp]	0	1
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013334 [exp]	8.5	0.8364
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10041643 [exp]	8.5	0.9030
AT2G19500		ATCKX2, CKX2	cytokinin oxidase 2 (.1)		Lus10031200 [exp]	9.9	0.8739
AT3G55470			Calcium-dependent lipid-bindin...		Lus10023410 [exp]	13.4	0.8858
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10041546 [exp]	17.9	0.8678
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10012212 [exp]	20.0	0.8946
					Lus10038520 [exp]	24.6	0.8878
AT4G27290			S-locus lectin protein kinase ...		Lus10014811 [exp]	32.0	0.8827
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042316 [exp]	33.7	0.8768
AT1G07570		APK1A	Protein kinase superfamily pro...		Lus10002697 [exp]	34.5	0.8826

Compare expression of checked genes

Lus10039317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.