Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52950 220 / 9e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027565 [exp] 728 / 0 AT5G52950 530 / 4e-173 unknown protein Lus10027563 [exp] 92 / 4e-21 ND / Lus10010839 [exp] 48 / 1e-05 AT3G30200 47 / 9e-06 Plant transposase (Ptta/En/Spm family) (.1) Lus10021770 [exp] 45 / 6e-05 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033800 [exp] 387 / 4e-123 AT5G52950 546 / 3e-179 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039318 pacid=23175665 polypeptide=Lus10039318 locus=Lus10039318.g ID=Lus10039318.BGIv1.0 annot-version=v1.0 ATGCCGCCGTTCCTGGCAGCGCTTATGGTGCTGAAGAAAGCCATGTTGAAGGCTGCAGAAGTTAAGTCAGAAGGTAAGCTTCAGGAACTTACTTGGTCTG ACTTCTGTAAGGCGGCAATTGAACACTTGCAGATAGATTTGGAAGATATTTTCTTTGTAAGGGCACACAACAAGTCTAAGAAGTTGAAGTTTCTCAAATG CTGGATGAAAGAAGCCAAGAAGTCCACTTACCAAAGTGCCCCCATTAGAGACAGTGACAAATTAGACCGTGACATCTCGAAATCAGAGGAAAGATTGAAT GATTTACCTCATGAAGGTGCACAACCAATTGCATCGTGTGCTTCAGCAGCAGAGGATGCATTGGCTGGAACTTCTAGAGTGCAGGATGAAGTTGCTGTTG ATTATCACTCTCAAACTTTGGAAACCTTCCTTGATGATCTTCCTCAGAAAGTTCAACAGGGACTCGAATGTGACGATGTGGACCTTGGTTCTCTGGCGGA GCGACTTGTTAACTCGTCTGTGTTTTGGTTGTATAAGATACGCGAAAATGAAACCAATGTGGAGGAGGATCAAACTCGAGAGGTGAAATTCGAGGATGGT TCCATGAGTAAAGTTGCTACGGAGCTAATGACCCTTTTACTTAAGGAGCCTAAGGACTTGGCTGCTAAGGCTTCCAATCCAAGTTCTACTGAGGTCACCT CAGAAAGAATAGTTAGAGAATATGAGCTACAGATTTTATTTCGGATGGAGATGCTGCAATCAGACATTGGAGCTAGTATCAAGGAGTCCTTGAAACAGAA GTTCGTGAAGCAAATTTGCTCCTGTTTAGAGAGCATTCAGTGTCGTCTCAATGGAGGGTTTTTCGGTGATTGGAGTCTTGATAAATATGTAGAGAAGATC TTAAAAGCTAGGTATTGTAAGAGTCTTGAAGATGTTGTCCACAGAATCTACGAAAGACTAGATCTTTTGCTGTTCGAAGACGAGGATGAACCCTCCAACC CATTATTCAGTAGTGAGGATGGGAATCAAACAGACGAGAGGAAAGGCAATGGAGGAAGAATCACCAATGCAGAACATAGCTCCTCCTCGTGGGCGGTAGA CAGTGAATCTCAAGGCGACTCCCAGGAGCTTGAACATGATGATGATGATCATGCTCGAAGATTGATCGAAGCTCAAGAGAGGAGACTGAGGGCTCGGAGG TTCGCATCCTTTAGGGTTCCGGACCTGCACAAAGTTTGGGTACCAAACCAGGCGAAACTGATGAAAGTAAAGCATGACCATCATCATGTCCCAAGACAAT CGAAACGGGAAGAACGTAGGAGAGGAAAGTATGACGTGGTATGTGAGACTCCCATGACAGGGAAGGTTAGATCAGAATGCAGCAGTAGTACTAGTGGAAA GATGAATAAAGCTGGTGCTGCAAAAACTACTGTTTGTGAAGAATCAACAGAAAAATACGGAGAACCGCAACAAGAAGGTGTGAACCATGGTGGAGGCTCC CGATCGTATGATCGTGTTAGGAAGAAGCGTAAGGTGGAGCCTGGCTTTGAGCCATGTAGAGAAGATGAGTGGATGGAGGCTAACGAATTACTGGACGAGT CGCACAGGGAACCTGAAGCAGCAGCTGTAGCGAGTAAGATCATTGAGCCGAAAGCTCAAGGAGTTTCAGATGATGATATCAATACTGACTGTCAATCTCA AACATTGGGGACAAAAGAACATCGTGTGGGAGTTTCGCACGATGGGCTACGATGTTACTCCCCAGGTTAG
AA sequence Show only first row Show all	>Lus10039318 pacid=23175665 polypeptide=Lus10039318 locus=Lus10039318.g ID=Lus10039318.BGIv1.0 annot-version=v1.0 MPPFLAALMVLKKAMLKAAEVKSEGKLQELTWSDFCKAAIEHLQIDLEDIFFVRAHNKSKKLKFLKCWMKEAKKSTYQSAPIRDSDKLDRDISKSEERLN DLPHEGAQPIASCASAAEDALAGTSRVQDEVAVDYHSQTLETFLDDLPQKVQQGLECDDVDLGSLAERLVNSSVFWLYKIRENETNVEEDQTREVKFEDG SMSKVATELMTLLLKEPKDLAAKASNPSSTEVTSERIVREYELQILFRMEMLQSDIGASIKESLKQKFVKQICSCLESIQCRLNGGFFGDWSLDKYVEKI LKARYCKSLEDVVHRIYERLDLLLFEDEDEPSNPLFSSEDGNQTDERKGNGGRITNAEHSSSSWAVDSESQGDSQELEHDDDDHARRLIEAQERRLRARR FASFRVPDLHKVWVPNQAKLMKVKHDHHHVPRQSKREERRRGKYDVVCETPMTGKVRSECSSSTSGKMNKAGAAKTTVCEESTEKYGEPQQEGVNHGGGS RSYDRVRKKRKVEPGFEPCREDEWMEANELLDESHREPEAAAVASKIIEPKAQGVSDDDINTDCQSQTLGTKEHRVGVSHDGLRCYSPG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52950			unknown protein		Lus10039318 [exp]	0	1
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	8.5	0.7882
AT1G61670			Lung seven transmembrane recep...		Lus10012872 [exp]	10.2	0.7341
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10018683 [exp]	11.0	0.7934
AT5G15700			DNA/RNA polymerases superfamil...		Lus10005097 [exp]	13.6	0.7971
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	21.6	0.8136
AT3G48900			single-stranded DNA endonuclea...		Lus10027451 [exp]	24.1	0.8070
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	33.3	0.7709
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012906 [exp]	39.2	0.7795
AT1G26170			ARM repeat superfamily protein...		Lus10000328 [exp]	41.2	0.7696
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10016695 [exp]	44.9	0.7838

Compare expression of checked genes

Lus10039318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.