Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52960 178 / 9e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027566 [exp] 253 / 3e-87 AT5G52960 184 / 3e-60 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033700 [exp] 181 / 4e-59 AT5G52960 203 / 9e-68 unknown protein Potri.016G123100 [exp] 170 / 5e-55 AT5G52960 167 / 6e-54 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11341 [flax] [poplar] DUF3143 Protein of unknown function (DUF3143)
Representative CDS sequence Show only first row Show all	>Lus10039319 pacid=23175445 polypeptide=Lus10039319 locus=Lus10039319.g ID=Lus10039319.BGIv1.0 annot-version=v1.0 ATGTTGTCCATCTCTTTCTCCATTATCGGAAGCAGCATCACTCCATCGCCATCCTTCCGCTTCTCAGCTCCTTCAAAATCTAGCTACTTCCCCGCACTCC ACTCCTCTTCCCTCCGGCCCTCTCTGCGCAGAAAATCCGTGACCTTACTTCCCTGTAGATCGTCGTCGGAGTCGGAGGATGTCCCAGCGAGCGAAGACGA AGACGACGACGAATGGCGGAAGAAGCTTCCGGAGAAAGAGAAGCCGCTCTACTCTCACAGCCTCCCTTGCATCGAGTACTGGCTCAAGGGGTTAGGGTTT TACCAGAGTAAAGAAGACCGCGCCGTTTGGAAGGTCGAGAACCCCGACTGGCACGCTCAGTTGTCCCTCGATGTTACCGATCTCTACATCAGGTACATGA AGAGTGGGTCAGGAAACCTCGAGAAGGATGTTGAGAGGAGGTTCAGTTACGCTCTGAGTAGAGAAGATATCGAGAATGCTGTCTTGGGAGGACCTTAG
AA sequence Show only first row Show all	>Lus10039319 pacid=23175445 polypeptide=Lus10039319 locus=Lus10039319.g ID=Lus10039319.BGIv1.0 annot-version=v1.0 MLSISFSIIGSSITPSPSFRFSAPSKSSYFPALHSSSLRPSLRRKSVTLLPCRSSSESEDVPASEDEDDDEWRKKLPEKEKPLYSHSLPCIEYWLKGLGF YQSKEDRAVWKVENPDWHAQLSLDVTDLYIRYMKSGSGNLEKDVERRFSYALSREDIENAVLGGP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52960			unknown protein		Lus10039319 [exp]	0	1
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10016969 [exp]	4.6	0.9291
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10040147 [exp]	5.3	0.9279
AT5G11480			P-loop containing nucleoside t...		Lus10011673 [exp]	5.3	0.9131
AT3G51510			unknown protein		Lus10033303 [exp]	6.5	0.9170
AT3G15900			unknown protein		Lus10011486 [exp]	7.1	0.9146
AT5G46580			pentatricopeptide (PPR) repeat...		Lus10004555 [exp]	7.3	0.9142
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10000959 [exp]	9.4	0.9166
AT5G06290		2CPB, 2-CysPrxB...	2-CYS PEROXIREDOXIN B, 2-cyste...		Lus10021295 [exp]	12.3	0.9128
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	17.9	0.9104
AT5G52960			unknown protein		Lus10027566 [exp]	18.4	0.8895

Compare expression of checked genes

Lus10039319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.