Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23740 585 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 563 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 540 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 514 / 5e-177 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 499 / 5e-170 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 491 / 3e-167 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 464 / 2e-156 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT3G17840 421 / 1e-139 RLK902 receptor-like kinase 902 (.1) AT1G48480 417 / 4e-138 RKL1 receptor-like kinase 1 (.1) AT1G68400 399 / 7e-131 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027568 [exp] 1115 / 0 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 763 / 0 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014943 [exp] 754 / 0 AT4G23740 634 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 667 / 0 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033936 [exp] 662 / 0 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 535 / 0 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 535 / 0 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 533 / 0 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 531 / 0 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G023500 [exp] 766 / 0 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 741 / 0 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 694 / 0 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 689 / 0 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 539 / 0 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 535 / 0 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 534 / 0 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 511 / 7e-175 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 513 / 8e-175 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.004G086100 [exp] 432 / 2e-144 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10039321 pacid=23175661 polypeptide=Lus10039321 locus=Lus10039321.g ID=Lus10039321.BGIv1.0 annot-version=v1.0 ATGGAAATCATCAAGCTATCATTTGTTTTCGCTGCAATCATAGCAAGTTCATTTCCCATCATCACCACTTCCGAGCCATTTGAAGACAAAGAAGCATTGC TGGATTTCATCAGGAATGTTCAGTTGACCTACTCTCCTAACTGGGACGAGAGCCTTCCATTATGCTTCTTCTGGACAGGAGTGACCTGCAACAGCGAAAA CTCTCGAGTCATAGCTCTCCATCTCCCCGGTATGGGAATTCGCGGCTCGATTCCTTCCAACACTCTGAGCAGACTCTCAGCCGTTCAGATGCTCAGCCTG GGATCTAACGGCATATCAGGAGCTTTCCCTTCTGATTTCACCAAGTTGAAGAACTTGACAGCGCTTTACCTTGAATACAACAACTTCACTGGACCGTTGC CTAAAGATTTTTCAGTATGGAGCAATCTCACTGTTCTTGATCTTTCAGGAAATGGATTTAATGGCAGCATTCCGAATTCTATATCGAACTTGCAGCATCT CACAGCATTGAATCTTTCCAACAATCATCTTACAGGGACTGTTCCTCGGTCCTTGTTAAGGTATCCAAGCTCAGCATTTTCCGGTAACGATTTAGAGATC GTTACTGTTACCGCCTTACCTCCAGCTATCCCAGTTCAACCACCTCATCCTCAGCCTTTTACGATCAAATCCGGTGGGAAACTAAGCGAGCCAGCGATAT TGGGGATTGTTTTGGGCATCTGTGTGGTGGGGTTTGTGACTATTGCTCTTACGATGATATGGTGCTTTTCGAAGAAAAGCAGGAAGAAGAAGGATGGATT GCCAGTCAAGTTACAGAAGAAAGAAGAGTACTCCTTAAAGATGAAAGCTGTAGAAAAGGGTAACAATAACAGACTTGAGTTCTTTGAAGGTTGCAGTCTT GCATTTGACTTGGAAGACTTGTTGAGAGCATCGGCAGAAGTGCTTGGGAAGGGAACCTACGGTACGACTTACAAGGCTGCGCTCGAGGATTTGAACACTG TGGTTGTAAAGAGGTTGAAAGAAGTTACGGTTACGAGAAAGGATTTCGAGCAGCAGATGGTTGTGGTTGGGAGCAGTAGGCATGAGAATGTGTCTCCATT GAGAGCATATTACTACTCAAAGGATGAGAAGCTCATGGTTTATGATTTCTACGACGATGGGAGCGTGTCCACGATGCTACATGGTAGAAGAGGGGAAGAC AGGACGCCATTAGACTGGGAAACTAGAGTGAGAATCGCAGTAGGTGCAGCAAGGGGAATTGCTTATATCCACACCCAACAAACTGGCAAACTTGTCCATG GGAACATAAGATCCTCAAACATCTTCCTAAACTCTGACGGGTACGGTTGCATTTCTGACGTTGGGTTAGCTACACTGATGAGTCCATTGCCTGCACCAGT CTCAAGAAGAGCTGCAGGGTACAGTGCTCCAGAGATAAAAGACCCAAGGAAGTCAACCCCTGCATCAGATGTCTACAGTTTCGGGGTGCTACTGCTAGAA CTACTCACGGGGAAATCCCCAACGCACGCTACCACGGGGAGCAGCGAAGAGGCTGTTCATCTGGTGAGATGGGTGAATTCCGTGGTGAGAGAAGAATGGA CCGGCGAAGTGTTTGATGTGGAGCTTCTTAGGTATCCTAACATTGAGGAGGAAATGGTGGAGATGCTGCAGATAGGGATGAACTGTGTGGTGAGAACACC GGATAAGAGGCCGAAGATGGCTGAAGTTGTGAAAATGGTGGAAGGGATCCGACGATTGAGCGTTGGAAGCCAGACATTCTCGCCGGATGCTGGTGTCGAA ATGGGTATGTCAACAACCACAACGCCGGAAGGTACCTCTTCAGCGGTACAGTGA
AA sequence Show only first row Show all	>Lus10039321 pacid=23175661 polypeptide=Lus10039321 locus=Lus10039321.g ID=Lus10039321.BGIv1.0 annot-version=v1.0 MEIIKLSFVFAAIIASSFPIITTSEPFEDKEALLDFIRNVQLTYSPNWDESLPLCFFWTGVTCNSENSRVIALHLPGMGIRGSIPSNTLSRLSAVQMLSL GSNGISGAFPSDFTKLKNLTALYLEYNNFTGPLPKDFSVWSNLTVLDLSGNGFNGSIPNSISNLQHLTALNLSNNHLTGTVPRSLLRYPSSAFSGNDLEI VTVTALPPAIPVQPPHPQPFTIKSGGKLSEPAILGIVLGICVVGFVTIALTMIWCFSKKSRKKKDGLPVKLQKKEEYSLKMKAVEKGNNNRLEFFEGCSL AFDLEDLLRASAEVLGKGTYGTTYKAALEDLNTVVVKRLKEVTVTRKDFEQQMVVVGSSRHENVSPLRAYYYSKDEKLMVYDFYDDGSVSTMLHGRRGED RTPLDWETRVRIAVGAARGIAYIHTQQTGKLVHGNIRSSNIFLNSDGYGCISDVGLATLMSPLPAPVSRRAAGYSAPEIKDPRKSTPASDVYSFGVLLLE LLTGKSPTHATTGSSEEAVHLVRWVNSVVREEWTGEVFDVELLRYPNIEEEMVEMLQIGMNCVVRTPDKRPKMAEVVKMVEGIRRLSVGSQTFSPDAGVE MGMSTTTTPEGTSSAVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23740			Leucine-rich repeat protein ki...		Lus10039321 [exp]	0	1
					Lus10026715 [exp]	2.0	0.9311
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Lus10027093 [exp]	4.2	0.9067
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10012557 [exp]	6.0	0.9106
AT2G45670			calcineurin B subunit-related ...		Lus10041384 [exp]	7.2	0.9111
AT5G57330			Galactose mutarotase-like supe...		Lus10020015 [exp]	7.5	0.8992
AT2G37195			unknown protein		Lus10026508 [exp]	9.9	0.8734
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	11.0	0.8492
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015518 [exp]	11.3	0.8942
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	13.7	0.8925
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Lus10012997 [exp]	15.0	0.9052

Compare expression of checked genes

Lus10039321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.