Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53310 246 / 3e-83 myosin heavy chain-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027569 [exp] 421 / 1e-150 AT5G53310 241 / 5e-80 myosin heavy chain-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G033100 [exp] 323 / 4e-113 AT5G53310 259 / 2e-88 myosin heavy chain-related (.1) Potri.015G023400 [exp] 312 / 7e-109 AT5G53310 248 / 4e-84 myosin heavy chain-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0266 [flax] [poplar] PH PF06017 [flax] [poplar] Myosin_TH1 Unconventional myosin tail, actin- and lipid-binding
Representative CDS sequence Show only first row Show all	>Lus10039322 pacid=23175646 polypeptide=Lus10039322 locus=Lus10039322.g ID=Lus10039322.BGIv1.0 annot-version=v1.0 ATGAGCAGATCCAACCGCCGAGTCCAAATCGACGATTCCGACGCCCCTAGATACGACCAGAACGGCGCCGCCGGAAGCGACGAGGAGGAAAGGAGCGGGA CGAAGCTCAGATCGTCCAGTAGCAACGTCAGCGACGATCAGGAGCCGTTCATGGGGGTCAAGGTTCGTCGGAAGGCTTCGCTCCATAGGGACGTCAAAGG GGATTACATCGACGTGCCTTCGCATCCTCGCCTCATGAAGATCTTGCATAAACAAGGTGACAAGCAGATATTGTTTGCAGATAAAGTGTTGAAATTCACA GCTTCAGGGAAGATGAAGCGGCGGATACTGTTGATGACTGACTTCGCCATTTACATGATTGACCCGGAAACTGATGCACTTAAGCGGAGGATAGCGATGG CAGCAGTAGAGAAGCTCTGTTTAAGTGAGCTGAGCGATAACTTTTTTGCAATCGTCATCCCAACAGAGTATGATCTACTTATTGCCAGTACCAGAAAGAC AGAAGTCGTTACGGTACTAGTTGAACATACCAAGAGCGCTTCGAACTATGAGCTTGATGTGGAATTCTCTAACAGCTTCGAGTATCAGGCAGCTGCAGAT GTGGTGAAGGAAGTTCAGTTCGAGGAAGTCGAGGGTACGTGTTACTTAGATTATATAACTATTCCAGACTCTCTATTATGA
AA sequence Show only first row Show all	>Lus10039322 pacid=23175646 polypeptide=Lus10039322 locus=Lus10039322.g ID=Lus10039322.BGIv1.0 annot-version=v1.0 MSRSNRRVQIDDSDAPRYDQNGAAGSDEEERSGTKLRSSSSNVSDDQEPFMGVKVRRKASLHRDVKGDYIDVPSHPRLMKILHKQGDKQILFADKVLKFT ASGKMKRRILLMTDFAIYMIDPETDALKRRIAMAAVEKLCLSELSDNFFAIVIPTEYDLLIASTRKTEVVTVLVEHTKSASNYELDVEFSNSFEYQAAAD VVKEVQFEEVEGTCYLDYITIPDSLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53310			myosin heavy chain-related (.1...		Lus10039322 [exp]	0	1
AT1G55270			Galactose oxidase/kelch repeat...		Lus10019425 [exp]	1.7	0.8109
AT4G36660			Protein of unknown function (D...		Lus10007156 [exp]	2.0	0.8104
AT4G40010		SNRK2-7, SNRK2....	SUCROSE NONFERMENTING 1-RELATE...		Lus10015676 [exp]	3.9	0.8039
AT5G53310			myosin heavy chain-related (.1...		Lus10027569 [exp]	4.0	0.7839
AT3G62220			Protein kinase superfamily pro...		Lus10004524 [exp]	7.1	0.7909
AT1G57680			unknown protein		Lus10008924 [exp]	8.5	0.7427
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	10.1	0.7851
AT3G44820			Phototropic-responsive NPH3 fa...		Lus10019522 [exp]	10.6	0.7956
AT1G13570			F-box/RNI-like superfamily pro...		Lus10034415 [exp]	11.0	0.7742
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10024908 [exp]	13.3	0.7300

Compare expression of checked genes

Lus10039322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.