Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53280 247 / 1e-81 PDV1 plastid division1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027574 [exp] 423 / 1e-150 AT5G53280 273 / 6e-92 plastid division1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022900 [exp] 304 / 6e-104 AT5G53280 259 / 2e-86 plastid division1 (.1) Potri.012G032200 [exp] 301 / 2e-102 AT5G53280 290 / 3e-98 plastid division1 (.1) Potri.009G111000 [exp] 64 / 2e-11 AT2G16070 229 / 8e-74 plastid division2 (.1.2) Potri.002G167500 [exp] 44 / 7e-05 ND / Potri.014G094600 [exp] 40 / 0.0008 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039325 pacid=23175655 polypeptide=Lus10039325 locus=Lus10039325.g ID=Lus10039325.BGIv1.0 annot-version=v1.0 ATGAGATGGGATATGGAGGTCGAAGAAATCGAAGCTGTCCTCGAGAAGATTTGGGATCTCCACGACAAGCTCAGCGACGCCATCCACACCATCTCCCGAG CTCACTTCAACTCCATCAAGAACCTCCGCAGGCCCTCCGCCGATAAGAAGCACCACCACCTCTTCGGCGGCAGCGACGACAACCGCGGAGGATTCGGCGG CGGAGGCGGCTACGTCTTCGTCAAGGAGTTCCGAGTCGACGATAACGAGTCAGCAATTCGTGAGGCTAAGAGCTTGAATGCTATCAGGACGGCGCTCGAG AACCTAGGCGAACAGCTCGAGTTCTTCCATACTGTACAGTTGCAGCAACGAGCCGAGAGAGATGCAACCATTGCGCGATTAGAGCAAACTAGGATCGTTC TGTCGCTGCGATTGGCTGAACACCATGGCAAGAAGTACAATGTCATCGAAGAAGCTCTAGCATTCATCGGGGGTGTACACGATCCAAATCGTTTCGTCTC CCCAGACAACCTGCACACCTACCCTCCGAGTCCCACGGGGGAGAATCTCAACAAGATACAAAGAAAGTCTTCAAATGTAGTGGTAAATGTTCTCATGTCC AGTTTTGATTTCGCTAAGAGATCTCTTAAACTGGACAACGTAGGTGGGGTGCTAGGGAATGTGGCTCTGTTTACTGTGAGTATGCTTGCATTGCTTCACC TGCAGCAACTAGATTCTTCCAAAGATCATTCATATAAACAGGAGCATTCTGGTTATCGAAACAGAGGCTACATGAGGAGAGCATCATTGACGGAAGGGTC ATCTTCCTCTGATGCCGGTTTGGATCAGTTGGATGTGATGCTGGCAAGGGGTTAA
AA sequence Show only first row Show all	>Lus10039325 pacid=23175655 polypeptide=Lus10039325 locus=Lus10039325.g ID=Lus10039325.BGIv1.0 annot-version=v1.0 MRWDMEVEEIEAVLEKIWDLHDKLSDAIHTISRAHFNSIKNLRRPSADKKHHHLFGGSDDNRGGFGGGGGYVFVKEFRVDDNESAIREAKSLNAIRTALE NLGEQLEFFHTVQLQQRAERDATIARLEQTRIVLSLRLAEHHGKKYNVIEEALAFIGGVHDPNRFVSPDNLHTYPPSPTGENLNKIQRKSSNVVVNVLMS SFDFAKRSLKLDNVGGVLGNVALFTVSMLALLHLQQLDSSKDHSYKQEHSGYRNRGYMRRASLTEGSSSSDAGLDQLDVMLARG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53280		PDV1	plastid division1 (.1)		Lus10039325 [exp]	0	1
AT5G53280		PDV1	plastid division1 (.1)		Lus10027574 [exp]	2.0	0.7668
AT1G79490		EMB2217	embryo defective 2217, Pentatr...		Lus10002871 [exp]	2.0	0.7747
AT5G11150		ATVAMP713	vesicle-associated membrane pr...		Lus10001492 [exp]	7.6	0.7871
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	11.7	0.7606
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10021996 [exp]	17.0	0.7198
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10010556 [exp]	19.4	0.7662
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	20.0	0.7551
AT3G27310		PUX1	plant UBX domain-containing pr...		Lus10032080 [exp]	21.7	0.7681
AT5G18475			Pentatricopeptide repeat (PPR)...		Lus10005540 [exp]	26.2	0.7402
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	31.0	0.7437

Compare expression of checked genes

Lus10039325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.