Plant FIBer expression Database

Lus10039326 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G53220 162 / 3e-48 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001067
[exp]
260 / 1e-84 AT5G53220 162 / 8e-45 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G022500
[exp]
169 / 1e-49 AT5G53220 165 / 1e-45 unknown protein
Potri.014G039200
[exp]
87 / 8e-20 AT5G53220 103 / 5e-24 unknown protein
PFAM info
Representative CDS sequence
>Lus10039326 pacid=23175603 polypeptide=Lus10039326 locus=Lus10039326.g ID=Lus10039326.BGIv1.0 annot-version=v1.0
ATGAGTGAAGTTCCCACTACGAAGGATGATGTTGAAGAAATCAAATCGGAAGAAGAAGATGGTTCCGAGAGTTCAGGCGATGATCGCATGAAGGAATTTG
TCATCGAGAGCTCTTCTGACGTGTCTGATGATGGTTTTGTTGGATTTCATGGAGACGATTCCATCGATTCAAGTGAAGAAGAAAGTGACTGCAATTCGGA
GATGCACGGAATCTTGTCCAGGCTTCGAAGAACCAAGGATCAGAAGTTCAAGTGGGAGTTTGAAGGCGACATGCTTGCAGACTTTGGTAAAGATTCCGAA
CTGTGCATGAGAGCTGTTTGTGTCCTATATCGACAACATCGACAACAAACTTCGGACGAACAAGTTTCGAAGGAAGCGTTATACCGTAATGGACGAGGAT
TCAGCAAGTTAGATGCTTACAGGGGAACCGAGACCGGGAGGTTTCTCACCGGTGGGTCTGGTAATATGGTTAAATTTGTTGAGGAATTGGAAGCATATGA
TCCCAAGGGAGTGGACAAGTGCAGAGAGTTGGCTTTTAAATATGCAAAGCAACTGTTTCAGATCTATCAGAACGGAGAGGACCCTTTCTTTTCACCTACC
GTAGACAACAAGGAAAACATGGCCTTGGTAGCATCCTAG
AA sequence
>Lus10039326 pacid=23175603 polypeptide=Lus10039326 locus=Lus10039326.g ID=Lus10039326.BGIv1.0 annot-version=v1.0
MSEVPTTKDDVEEIKSEEEDGSESSGDDRMKEFVIESSSDVSDDGFVGFHGDDSIDSSEEESDCNSEMHGILSRLRRTKDQKFKWEFEGDMLADFGKDSE
LCMRAVCVLYRQHRQQTSDEQVSKEALYRNGRGFSKLDAYRGTETGRFLTGGSGNMVKFVEELEAYDPKGVDKCRELAFKYAKQLFQIYQNGEDPFFSPT
VDNKENMALVAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G53220 unknown protein Lus10039326
[exp]
0 1
AT2G28840 XBAT31 XB3 ortholog 1 in Arabidopsis ... Lus10040829
[exp]
10.2 0.7638
AT4G37300 MEE59 maternal effect embryo arrest ... Lus10018201
[exp]
10.2 0.7618
AT5G02440 unknown protein Lus10024400
[exp]
22.0 0.7723
AT5G48250 CO COL10 B-box type zinc finger protein... Lus10041096
[exp]
23.3 0.7481
AT1G32540 LOL1 lsd one like 1 (.1.2.3) Lus10040081
[exp]
28.5 0.7711
AT5G36930 Disease resistance protein (TI... Lus10004719
[exp]
28.6 0.7589
AT5G14370 CCT motif family protein (.1) Lus10014886
[exp]
30.8 0.7590
AT4G15545 unknown protein Lus10034001
[exp]
36.9 0.7486
AT3G10050 OMR1 L-O-methylthreonine resistant ... Lus10020520
[exp]
61.3 0.6962
Lus10003883
[exp]
63.7 0.7206

Lus10039326 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.