Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001067 [exp] 273 / 6e-90 AT5G53220 162 / 8e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G022500 [exp] 53 / 4e-08 AT5G53220 165 / 1e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10039327 pacid=23175525 polypeptide=Lus10039327 locus=Lus10039327.g ID=Lus10039327.BGIv1.0 annot-version=v1.0 ATGTACCATGAATTGAAGTCATCTTTGGGAAGAAGTTTCGAGGAAAGGATGACTGCTGAAGATGGAGCTACTCATGACATTTCAGGAACAGCAAGTAGCA ATCTTCGTAGATCCGGAGGCCTTGATAATAAAAAAGCTATAAGATCACTGTTTATTGAAGAAGAGAGAACTTCCACTGGGAAAATAGTTCCATCAACTCC GATGGATCGCAAACCTTCATGTCCCGCCATCATAAATCTAGACGCCAGTGATGACGACGGACCTGATGTCATTAAAACTGACGAAGAGAAGGCAAAGATC TGCACTTTGGGAAGAATTATAGACACTGAAAATGAGAAATTGCCTGAATGCTGCTTGGAAGATGATATGGAAGTCTGGCTTCGTACCACACCACGCCTGA GTACTTCGAAAAGGAAGAGAGCTGCAAACATGGTTACTAGTGATAGTGAGAATGAGAGTGATGATGAAGATAATATTCCATTGTGCAAGTGGAAGCCGAA GCGTTTCAGCAAAGTTAGTTCCGATGCAAATGGCTCACCAAATTTGGAGAGCGGTGATGATGATACAAAAGAGTCAGTACCGCTCGTAGACGGCGTTTGA
AA sequence Show only first row Show all	>Lus10039327 pacid=23175525 polypeptide=Lus10039327 locus=Lus10039327.g ID=Lus10039327.BGIv1.0 annot-version=v1.0 MYHELKSSLGRSFEERMTAEDGATHDISGTASSNLRRSGGLDNKKAIRSLFIEEERTSTGKIVPSTPMDRKPSCPAIINLDASDDDGPDVIKTDEEKAKI CTLGRIIDTENEKLPECCLEDDMEVWLRTTPRLSTSKRKRAANMVTSDSENESDDEDNIPLCKWKPKRFSKVSSDANGSPNLESGDDDTKESVPLVDGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10039327 [exp]	0	1
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	3.6	0.8220
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	4.2	0.8117
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	4.2	0.8195
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	7.7	0.8108
					Lus10034884 [exp]	8.5	0.7975
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	9.2	0.8020
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	11.0	0.7938
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	11.5	0.7806
AT3G11280	MYB		Duplicated homeodomain-like su...		Lus10014837 [exp]	13.4	0.7920
					Lus10040408 [exp]	14.4	0.7480

Compare expression of checked genes

Lus10039327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.