Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53210 132 / 3e-35 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G06120 102 / 8e-26 bHLH MUTE, bHLH045 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G24140 105 / 3e-25 bHLH bHLH097, FMA FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G01460 99 / 2e-23 bHLH bHLH057 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G22490 98 / 5e-23 bHLH bHLH094 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46810 94 / 2e-21 bHLH bHLH070 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G46690 93 / 3e-21 bHLH bHLH071 beta HLH protein 71 (.1) AT1G72210 92 / 4e-21 bHLH bHLH096 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G61950 92 / 7e-21 bHLH bHLH067 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT5G65320 81 / 4e-17 bHLH bHLH099 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001066 [exp] 383 / 1e-132 AT5G53210 268 / 9e-88 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014938 [exp] 126 / 6e-34 AT5G53210 264 / 2e-87 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038823 [exp] 127 / 5e-32 AT5G24120 547 / 0.0 SIGMA FACTOR 5, sigma factor E (.1) Lus10007139 [exp] 111 / 3e-27 AT3G24140 308 / 2e-101 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10016680 [exp] 109 / 3e-26 AT3G24140 358 / 2e-120 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034031 [exp] 98 / 1e-23 AT3G06120 225 / 8e-75 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10010101 [exp] 96 / 3e-23 AT2G46810 199 / 1e-63 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029950 [exp] 98 / 7e-23 AT1G72210 226 / 4e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10000332 [exp] 98 / 9e-23 AT1G22490 221 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G202900 [exp] 171 / 4e-52 AT3G06120 250 / 5e-85 MUTE, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.015G022300 [exp] 145 / 2e-40 AT5G53210 152 / 1e-42 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.012G031800 [exp] 144 / 5e-40 AT5G53210 303 / 2e-101 SPEECHLESS, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G314400 [exp] 104 / 7e-25 AT3G24140 399 / 2e-137 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.017G054500 [exp] 101 / 6e-24 AT3G24140 344 / 8e-116 FAMA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G141100 [exp] 97 / 9e-23 AT5G46690 222 / 6e-71 beta HLH protein 71 (.1) Potri.003G093200 [exp] 96 / 1e-22 AT5G46690 191 / 8e-59 beta HLH protein 71 (.1) Potri.013G025900 [exp] 97 / 2e-22 AT1G72210 243 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G180300 [exp] 97 / 3e-22 AT2G46810 228 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G101900 [exp] 94 / 1e-21 AT1G72210 256 / 4e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10039328 pacid=23175498 polypeptide=Lus10039328 locus=Lus10039328.g ID=Lus10039328.BGIv1.0 annot-version=v1.0 ATGAACGACAGCTTGTTGTCTGGTTTCCTACAGGATTCAGGATTTGGCATCAGCAACAACAACAACAGCTTTCTCGATGGTGGTAATGGTAGTGATCTCT TTTCCATCTTTGACTCCTTCCACCATGTCACCACCGCCACCGCCGCCTTCCCTCCTCCTCCTACAACTACCACCCACAAGTCGACGTCTTATTGTCATGG TGCCTTGGAGACGGAACCTAAGACCAAGCGGCAAAAGACGGCTAGTACTACTGCAACCGAGGAGGTAGCTAACCCTGACGAGGATGGCCTGTTTGGCGGC GGAAGTGGTCGGGTGTCTCACATCACGGTGGAGCGTAACCGCCGGAAGCAGATGAACGGCCACTTGTCCCTCCTCAGGTCTCTCATGCCTTCCTTCTATG TCAAACGAGGAGACCAAGCATCAATAATAGGAGGAGTAGTGGACTACATCAAAGAGCTGCAGCAAGTCCTACAATCCTTAGAAGCCAAGAAGCAACGCAA AGCCTATACCGAAGGCCTCTTAAGCCCAAGGCTAATCCCCAGTCCAAGGCCCATTAACTTGCCACCTATAAGCCCACGAACCCCCCAAACCCCTAACAGC CACATAACGACGTCGTTGCTCCAGCAACAACATCAAATGTTCACTGCTGCTAGTACTAGTAGTAATCTTCTTCTCCACAACAACTACTACAATTCCTCAA CAGTGGAGCCGTCTCCGACCACCTCGTCTTCATCTTCCTCCAACAATATCATCCTTAACAACGTCGATAATACCATTAACGACCTGGTTGCGAAATCCAG GTCGTCGGTGGCTGACGTGGAGGTGAAATTCTCGGGGGCGAACCTCGTGGTGAAGACGGCCTACCCTTCCAGGTTTCCTGGACAGGTTGTTAGGATCATC TCAGCTCTTGAGGACATGTGTCTCGAGATTCTCCACGTCAGCATTAACGGTGTGGATGATACCATGCATAACTCCTTCACCATTAAGATCGGAGTTGAGT GCCAACTAAGTGCAGAAGAGCTAGCTCAACAAATCCAACACACATTCTGCTGA
AA sequence Show only first row Show all	>Lus10039328 pacid=23175498 polypeptide=Lus10039328 locus=Lus10039328.g ID=Lus10039328.BGIv1.0 annot-version=v1.0 MNDSLLSGFLQDSGFGISNNNNSFLDGGNGSDLFSIFDSFHHVTTATAAFPPPPTTTTHKSTSYCHGALETEPKTKRQKTASTTATEEVANPDEDGLFGG GSGRVSHITVERNRRKQMNGHLSLLRSLMPSFYVKRGDQASIIGGVVDYIKELQQVLQSLEAKKQRKAYTEGLLSPRLIPSPRPINLPPISPRTPQTPNS HITTSLLQQQHQMFTAASTSSNLLLHNNYYNSSTVEPSPTTSSSSSSNNIILNNVDNTINDLVAKSRSSVADVEVKFSGANLVVKTAYPSRFPGQVVRII SALEDMCLEILHVSINGVDDTMHNSFTIKIGVECQLSAEELAQQIQHTFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10039328 [exp]	0	1
AT2G21910		CYP96A5	"cytochrome P450, family 96, s...		Lus10002524 [exp]	1.0	0.9405
AT5G60880		BASL	breaking of asymmetry in the s...		Lus10034654 [exp]	2.4	0.9059
AT2G31980		AtCYS2	PHYTOCYSTATIN 2 (.1)		Lus10041257 [exp]	2.4	0.9026
AT5G53210	bHLH	SPCH, bHLH098	SPEECHLESS, basic helix-loop-h...		Lus10001066 [exp]	3.2	0.8916
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	4.9	0.8976
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10000652 [exp]	5.5	0.8107
					Lus10006808 [exp]	5.5	0.8900
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	6.7	0.8715
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10026208 [exp]	10.5	0.8487
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007138 [exp]	11.2	0.8752

Compare expression of checked genes

Lus10039328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.