Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41040 399 / 6e-136 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 367 / 9e-124 HXXXD-type acyl-transferase family protein (.1) AT3G48720 365 / 5e-123 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G48930 219 / 2e-66 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) AT3G03480 186 / 1e-53 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT1G03390 182 / 6e-52 HXXXD-type acyl-transferase family protein (.1) AT5G17540 181 / 1e-51 HXXXD-type acyl-transferase family protein (.1) AT1G65450 173 / 9e-49 HXXXD-type acyl-transferase family protein (.1.2.3) AT2G40230 172 / 1e-48 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025523 [exp] 666 / 0 AT5G41040 406 / 3e-139 HXXXD-type acyl-transferase family protein (.1.2) Lus10032020 [exp] 464 / 7e-160 AT5G41040 443 / 2e-151 HXXXD-type acyl-transferase family protein (.1.2) Lus10035189 [exp] 451 / 8e-157 AT5G41040 440 / 2e-152 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 434 / 4e-150 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2) Lus10026737 [exp] 422 / 1e-147 AT5G41040 249 / 3e-80 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 412 / 2e-141 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10043189 [exp] 408 / 7e-140 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 400 / 1e-136 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10035190 [exp] 393 / 1e-133 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G326300 [exp] 438 / 2e-151 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.015G100800 [exp] 410 / 5e-141 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.017G068500 [exp] 382 / 5e-130 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.014G166600 [exp] 303 / 1e-98 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G105500 [exp] 225 / 1e-68 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.003G183900 [exp] 223 / 9e-68 AT5G48930 758 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.005G230900 [exp] 223 / 1e-67 AT1G27620 607 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.002G032200 [exp] 223 / 2e-67 AT1G27620 614 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G042900 [exp] 221 / 4e-67 AT5G48930 749 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.018G104700 [exp] 208 / 4e-62 AT5G48930 489 / 5e-172 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10039329 pacid=23175521 polypeptide=Lus10039329 locus=Lus10039329.g ID=Lus10039329.BGIv1.0 annot-version=v1.0 ATGGCGATCTCTACCAAGGTTGAGCAGCCGCTAACAGTGAAGCTGAACGGGAAGCCGACGTTGATCCCTCCGGCGGAAAATACACCAAAGGGCATGCATT TCCTCTCTAACCTCGATTACTGTGACATGTTTATATACTCTTTGTTCTCTTACAAGTCAACCGAGAAAGGAAATGACAATGCTGCCCAAGTTCTGAAAAA TGCGTTGAGTAATGTCCTTGTTCATTACTACCCTCTCGCCGGCCGGCTGACTGTCGGTCAGGACGGTAAACCTGCCGTCGATTGCACCGGCGAGGGCGCC ATTTTCGTAGAGGCCGATGCAGATTGTGAATTGGGGAACATTGATCTCTCCAAGCCGGATCGCGCTACTCGTTCTAAGTTTGTGTACAAGATTCTTGGTG CCAAGAGCGCACTTGAACTTCCTCCTTTAATGGTTCAGGTAACGCGGTTCAAATGCGGGGCATTCGTGCTTGGTACTTCTTATAATCATTTTCTCGGAGA TGGTGTTGCAATCGTCGAATTCCTCAATTCATGGGCCGAAACGGCTCAAGGGTTGCCACTTTCGGTACCTCCGGTTATCGAAACAACCTTACTCAAAGCA CGAGACCCACTAGTAATCAGCTACCACCACTCCGAATACGATAACTTGGAGGACAAGTCGTCCAACTTCAACGGCTTCGACAAAGAACCCGTGGTATACG AGTACGCCCACTTCACCGAAGAGATGATTCGCAAGATCAAGCAACGTGTTCTCGCAGAAGGAAAACATAATGGTCAAATCGTCACAGAGTGCTCCACTTT TGAGGCGGTTGTGAGTTTCGTGTGGAGGGCGAGAATCAAGGCGCTAAAGATGGTCCCCGAGCAAGAAACAAGACTCATGTTGGTCATGGATGTGCGGGAT AGGGTGAGCCCGAAGTTGCCCAAAGGGTATTTTGGTAATGCGGTTAAAATGATGACAACTGGCACGTGGAAGGCTCGCGAGATTTTGGATAAACCACATT GTTACGCGGTCAAGAAGATCCAAGACGGAATAGAGAGGTGTTGTGACGGTATCGTAAGGTCTACCATAGACTATATCGAGGCAACAAGAGCAACCAGGCC TTTGGGGTATACCATGATAGCAACAGCATGGTATAAGCTGCCTACAAATTCTATTGACTTTGGTTGGGGCGGACCGTTGGCATGCGAACCGGTTGAATCA CCTCAGTATGAATCGGTTACTTTTCTAGCTCATCATAAGGAGATGAAGAGCATAAATGCCTTCATTGGCCTGCCGGCTTCCGCCATGAAAACCTTCCAAA AATTGGTCCGTAGTTCCAACTTTGATTATCAATTTGATGAATTATTAGTTCCTTATGGTCTCAGTAAATTATAA
AA sequence Show only first row Show all	>Lus10039329 pacid=23175521 polypeptide=Lus10039329 locus=Lus10039329.g ID=Lus10039329.BGIv1.0 annot-version=v1.0 MAISTKVEQPLTVKLNGKPTLIPPAENTPKGMHFLSNLDYCDMFIYSLFSYKSTEKGNDNAAQVLKNALSNVLVHYYPLAGRLTVGQDGKPAVDCTGEGA IFVEADADCELGNIDLSKPDRATRSKFVYKILGAKSALELPPLMVQVTRFKCGAFVLGTSYNHFLGDGVAIVEFLNSWAETAQGLPLSVPPVIETTLLKA RDPLVISYHHSEYDNLEDKSSNFNGFDKEPVVYEYAHFTEEMIRKIKQRVLAEGKHNGQIVTECSTFEAVVSFVWRARIKALKMVPEQETRLMLVMDVRD RVSPKLPKGYFGNAVKMMTTGTWKAREILDKPHCYAVKKIQDGIERCCDGIVRSTIDYIEATRATRPLGYTMIATAWYKLPTNSIDFGWGGPLACEPVES PQYESVTFLAHHKEMKSINAFIGLPASAMKTFQKLVRSSNFDYQFDELLVPYGLSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	1.4	1.0000
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	2.8	1.0000
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	3.5	1.0000
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	3.9	0.9876
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	4.0	1.0000
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	4.2	0.9875
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	4.6	0.9827
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	5.7	0.9703
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	6.0	0.9626
AT5G38760			Late embryogenesis abundant pr...		Lus10012179 [exp]	7.2	0.8619

Compare expression of checked genes

Lus10039329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.