Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26040 234 / 6e-72 HXXXD-type acyl-transferase family protein (.1) AT3G30280 203 / 3e-60 HXXXD-type acyl-transferase family protein (.1) AT4G15390 194 / 1e-56 HXXXD-type acyl-transferase family protein (.1) AT1G24430 189 / 9e-55 HXXXD-type acyl-transferase family protein (.1) AT5G47950 184 / 3e-53 HXXXD-type acyl-transferase family protein (.1) AT1G24420 166 / 3e-46 HXXXD-type acyl-transferase family protein (.1) AT5G47980 159 / 2e-43 HXXXD-type acyl-transferase family protein (.1) AT5G23970 156 / 1e-42 HXXXD-type acyl-transferase family protein (.1) AT4G15400 137 / 1e-35 HXXXD-type acyl-transferase family protein (.1) AT5G48930 95 / 7e-21 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026736 [exp] 301 / 2e-99 AT3G26040 129 / 7e-34 HXXXD-type acyl-transferase family protein (.1) Lus10025522 [exp] 276 / 8e-88 AT3G26040 236 / 9e-73 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 257 / 1e-80 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 247 / 9e-77 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 232 / 4e-71 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 211 / 4e-63 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10036929 [exp] 194 / 6e-55 AT3G26040 319 / 1e-102 HXXXD-type acyl-transferase family protein (.1) Lus10042433 [exp] 183 / 1e-52 AT3G26040 249 / 8e-78 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 180 / 3e-51 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010700 [exp] 258 / 3e-81 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.010G053800 [exp] 238 / 2e-73 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 234 / 3e-72 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.005G250500 [exp] 229 / 5e-70 AT3G26040 304 / 3e-99 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 222 / 2e-67 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 218 / 7e-66 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 218 / 2e-65 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.017G010600 [exp] 210 / 5e-63 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Potri.019G001400 [exp] 208 / 4e-62 AT3G26040 223 / 6e-68 HXXXD-type acyl-transferase family protein (.1) Potri.008G034300 [exp] 208 / 4e-62 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10039330 pacid=23175468 polypeptide=Lus10039330 locus=Lus10039330.g ID=Lus10039330.BGIv1.0 annot-version=v1.0 ATGGAGATAGAAACAATTTCAAGAAGCTATGTGAAACCTTCTTCCCCAACACCTCCCCATCTCAAGACATACAACCTCAGCGGAATTGACCAAATTAACC CCTCCCTCTACAACCCGGTTATCCTCTTCTACCCCCCTGACCCGACCCAACAACCAAACCAACACCGCCGCCTCAAACAATCCTTGTCCCACACTCTATC CCGGTATTACCCCTTAGCCGGAAAGTTGAAAGACAGTCTCTCCATCGACTGCTGTGATGCCGGAGCATTTTACTCCGAGGCTAAAATCGTCAATTCCTCT TTCTCCTCGCTCACCCAATTCCTCGACCAACTAAACCTCTCCACGTTGCGGGCGCTCCTCCCGATAGACGCCGTGGAAGGGGGGGATATCTGTTCTCCGC CTCCGCCGGGATCTCATCTCCTCCTCCTACAGGAAACCTGCTTTCCTTGCGGCGGACTCGCCATCGGATTGCTGGCCGCCCACAATCTCCTCGACGGTTC CTCCATTGCTTCGTTTATCCTGGACTGGTCCTCTGCCGCCGCCTGCCGGATACCAAATTCTGGTGGGGGTGGAGCATATAGCGGGAACCCAAAGTTCGCC GGTGATTCTATGTTTCCGCAAAACGAGGAACTGTTTGAAAGGTTGGTCGCTCCTGGACCGTCGACCGCGACGGTGGCTGCAACAAAGAGAGGTGTTACTA CACGGTTTGTGTTTCACGCGGACGGCTTAGCGAGTCTGAAGAAGAAACTCAAAAAACCGATCGAAAATGATAATGAAGGCAAGAGCATTACTCTCAGTCG AGTTCAAGTTGTAACAACCCTCTTTAGCTCGGCCATTCTCAGTGCTTTCGAGTCAACCAGCGGCTCAACATCACCTTCGCGGCCAGTTGTCGTCACCCAA GCCGTGAATCTACGAGGGAAGGCTAACCCTCCATTCCCATCAAACTCAATTGGAAATTATGTAATTAACGCAGTCGCCACACTAACCTTCACCACCACCG ATGTGGCGAAGATACTACAGGATTCGGTGTCCAAGATCGACGCAGAATTCGTAAAAGGGATACAAGGGGAGCATGGAAAGTCCCTACTGGCGGATGCAAT GAGAGAAGAGGACAATGCGGTGGCGGGGGCCGAGCGCCGAATAAGCTTCACAAGTTTAAGCCGGTCTGGTTTATACGATGCGGATTTCGGGTGGGGTAAA CCGGTTTGGATCGGAACCGTGCCAAATGACGTAGTGGATTTTGTGGCGATTATGGATACCAAGGATGGGACTGGGCTGGAAGTTTGGGCTTGTTTGGAGG AAAATGAGATGGCGGTGTTGAAGAATGACAAGTCCATTCTCTCGTTTTCTTCTCTGGAACCTAGTCCCAATGGCAATATGGGGTGTGTGTGA
AA sequence Show only first row Show all	>Lus10039330 pacid=23175468 polypeptide=Lus10039330 locus=Lus10039330.g ID=Lus10039330.BGIv1.0 annot-version=v1.0 MEIETISRSYVKPSSPTPPHLKTYNLSGIDQINPSLYNPVILFYPPDPTQQPNQHRRLKQSLSHTLSRYYPLAGKLKDSLSIDCCDAGAFYSEAKIVNSS FSSLTQFLDQLNLSTLRALLPIDAVEGGDICSPPPPGSHLLLLQETCFPCGGLAIGLLAAHNLLDGSSIASFILDWSSAAACRIPNSGGGGAYSGNPKFA GDSMFPQNEELFERLVAPGPSTATVAATKRGVTTRFVFHADGLASLKKKLKKPIENDNEGKSITLSRVQVVTTLFSSAILSAFESTSGSTSPSRPVVVTQ AVNLRGKANPPFPSNSIGNYVINAVATLTFTTTDVAKILQDSVSKIDAEFVKGIQGEHGKSLLADAMREEDNAVAGAERRISFTSLSRSGLYDADFGWGK PVWIGTVPNDVVDFVAIMDTKDGTGLEVWACLEENEMAVLKNDKSILSFSSLEPSPNGNMGCV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10039330 [exp]	0	1
AT1G17930			Aminotransferase-like, plant m...		Lus10033415 [exp]	5.2	0.6923
AT5G46795		MSP2	microspore-specific promoter ...		Lus10000907 [exp]	6.9	0.5593
AT1G64870			unknown protein		Lus10002022 [exp]	7.9	0.6668
					Lus10028949 [exp]	27.5	0.5511
AT3G47570			Leucine-rich repeat protein ki...		Lus10030851 [exp]	30.7	0.5540
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10003012 [exp]	37.9	0.5525
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10033554 [exp]	41.7	0.5026
AT1G18760			Zinc finger, C3HC4 type (RING ...		Lus10020558 [exp]	48.4	0.5063
AT5G02280			SNARE-like superfamily protein...		Lus10023793 [exp]	53.5	0.4939
AT5G50220			F-box family protein (.1)		Lus10015170 [exp]	64.3	0.5188

Compare expression of checked genes

Lus10039330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.