Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24110 156 / 6e-45 WRKY ATWRKY30, WRKY30 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) AT4G11070 154 / 5e-44 WRKY ATWRKY41, WRKY41 WRKY family transcription factor (.1.2) AT4G23810 146 / 7e-41 WRKY ATWRKY53, WRKY53 WRKY family transcription factor (.1) AT2G46400 101 / 2e-24 WRKY ATWRKY46, WRKY46 WRKY DNA-binding protein 46 (.1) AT3G56400 100 / 4e-24 WRKY ATWRKY70, WRKY70 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) AT2G40750 89 / 2e-19 WRKY ATWRKY54, WRKY54 WRKY DNA-binding protein 54 (.1) AT2G40740 88 / 2e-19 WRKY ATWRKY55, WRKY55 WRKY DNA-binding protein 55 (.1.2) AT5G45260 85 / 1e-17 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G29280 77 / 5e-16 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT1G66600 76 / 8e-16 WRKY ABO3, ATWRKY63, WRKY63 WRKY DNA-binding protein 63, ABA overly sensitive mutant 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001062 [exp] 484 / 1e-172 AT4G11070 169 / 5e-50 WRKY family transcription factor (.1.2) Lus10032372 [exp] 167 / 2e-48 AT4G11070 234 / 4e-75 WRKY family transcription factor (.1.2) Lus10023099 [exp] 166 / 1e-47 AT4G11070 235 / 3e-75 WRKY family transcription factor (.1.2) Lus10001902 [exp] 147 / 2e-41 AT4G11070 210 / 6e-66 WRKY family transcription factor (.1.2) Lus10003894 [exp] 135 / 1e-36 AT4G11070 196 / 1e-60 WRKY family transcription factor (.1.2) Lus10029022 [exp] 100 / 3e-24 AT2G40740 157 / 8e-47 WRKY DNA-binding protein 55 (.1.2) Lus10012870 [exp] 90 / 4e-20 AT3G56400 153 / 1e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10030517 [exp] 89 / 1e-19 AT3G56400 162 / 5e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Lus10029021 [exp] 86 / 6e-19 AT3G56400 149 / 3e-43 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G031700 [exp] 221 / 5e-69 AT5G24110 196 / 4e-60 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY DNA-binding protein 30 (.1) Potri.002G168700 [exp] 187 / 5e-56 AT2G46400 170 / 3e-50 WRKY DNA-binding protein 46 (.1) Potri.014G096200 [exp] 185 / 3e-55 AT4G23810 170 / 7e-50 WRKY family transcription factor (.1) Potri.003G138600 [exp] 180 / 1e-53 AT4G11070 234 / 5e-75 WRKY family transcription factor (.1.2) Potri.001G092900 [exp] 174 / 2e-51 AT4G11070 238 / 8e-77 WRKY family transcription factor (.1.2) Potri.006G109100 [exp] 99 / 3e-23 AT3G56400 129 / 4e-35 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.019G059300 [exp] 99 / 6e-23 AT2G40740 168 / 2e-49 WRKY DNA-binding protein 55 (.1.2) Potri.013G090400 [exp] 97 / 2e-22 AT2G40740 166 / 8e-49 WRKY DNA-binding protein 55 (.1.2) Potri.016G137900 [exp] 90 / 5e-20 AT3G56400 127 / 2e-34 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1) Potri.013G090300 [exp] 84 / 5e-18 AT3G56400 172 / 1e-51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY DNA-binding protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10039331 pacid=23175607 polypeptide=Lus10039331 locus=Lus10039331.g ID=Lus10039331.BGIv1.0 annot-version=v1.0 ATGAGCATTCATCCTCGGATATCGTCTGATGAGGATGACTGGGAGCAGAAGTGCAGTAGTCTGGCGGCTGAGCTGGCATCCGGGAGGGACGTGGCCAAGC AGCTCCAGCTCATCCTCTTCCCACCGTCCAGTCATCACCATGACGTGACTCGGGAAATGCTGGTGAAGAAGATCCTTGTTTCCTACGACAACGCGCTAAT CTTGCTGAACCAGCGAAACCAGAACCGGATGGGTCAGATTAAGTCGGAGTATTCGCCGCCACCGCCGCCGACAATGAATGGGAGTCCTAGGAGTGAGGAC TCTGACCGTGACTGCTCGCCGGATGTCAACGTGGTCAATCCGACGACTGGGTCCACCTCTAGGAAAAGGAAGAGCAGTATTCCAAGGTGGACGCATCAGG TGAAAGTGAGCCCGGGGATGGGACTGGAAGGTCCACTTGATGATGGTTTCAGCTGGAGGAAATACGGCCAAAAGGACATCCTTGGTGCCAAATACCCACG AGGGTATTACAGGTGCACACTAAGGAACGTGCAAGGATGCCTGGCCACAAAACAAGTCCAAAGGTCCGACCAAGACCCTTCCATTCTCGAGATTACCTAC AAGGGAAGGCACACCTGCTCCGTCCATTCATCATCCCCTCCGCCGCCGCCACCGCCGCCGCCAACCACCGTGGCAGATAACCACGACCATCTCCTCCTGA ATTTCCAGACGGGACTCAAGGTCATAACCGACGACTTGGAGTTGACCAACAACTACTCTTCAGCCCCATTGCCACCTTCTAACTTTGCCAGCTTCTTTCC TCCGCCGCCTTTTACCGCGGCCGGGAGCTTCTTCCCTTCTCCGGCGACCAGCAGCTTTGTCCCTCCTCCGCCGACAAGCAGTACCGTTTACAACCACGTG GGTTTGGGTCCAGCCGCTTCTTCTTCGGGTAATTTGGGTCCGGCTGCTTCTTCTTCGGGTAACTCTACTCCGACCAGCTCGGCCGCCACGGTTGGATTGG CTGATCATCATGACTACCCGTTTGGGAACTTGGATTTGTTTGATAGTTATCCGACAACAACCTACGGATTCGACAACTCCGGCTTCTTTTCGTAG
AA sequence Show only first row Show all	>Lus10039331 pacid=23175607 polypeptide=Lus10039331 locus=Lus10039331.g ID=Lus10039331.BGIv1.0 annot-version=v1.0 MSIHPRISSDEDDWEQKCSSLAAELASGRDVAKQLQLILFPPSSHHHDVTREMLVKKILVSYDNALILLNQRNQNRMGQIKSEYSPPPPPTMNGSPRSED SDRDCSPDVNVVNPTTGSTSRKRKSSIPRWTHQVKVSPGMGLEGPLDDGFSWRKYGQKDILGAKYPRGYYRCTLRNVQGCLATKQVQRSDQDPSILEITY KGRHTCSVHSSSPPPPPPPPPTTVADNHDHLLLNFQTGLKVITDDLELTNNYSSAPLPPSNFASFFPPPPFTAAGSFFPSPATSSFVPPPPTSSTVYNHV GLGPAASSSGNLGPAASSSGNSTPTSSAATVGLADHHDYPFGNLDLFDSYPTTTYGFDNSGFFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10039331 [exp]	0	1
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10021263 [exp]	1.0	0.9090
AT1G29290			unknown protein		Lus10029256 [exp]	3.2	0.8782
AT3G55430			O-Glycosyl hydrolases family 1...		Lus10040294 [exp]	5.5	0.8703
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001062 [exp]	7.5	0.8610
AT1G70420			Protein of unknown function (D...		Lus10029153 [exp]	11.0	0.8339
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10034897 [exp]	12.3	0.8393
AT1G76650		CML38	calmodulin-like 38 (.1.2.3)		Lus10022343 [exp]	13.9	0.8479
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	15.0	0.7848
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10007921 [exp]	16.2	0.7830
AT1G76600			unknown protein		Lus10037249 [exp]	16.6	0.8299

Compare expression of checked genes

Lus10039331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.