Plant FIBer expression Database

Lus10039333 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24130 181 / 5e-57 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001061
[exp]
326 / 1e-113 AT5G24130 326 / 2e-111 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G021100
[exp]
216 / 6e-71 AT5G24130 310 / 1e-105 unknown protein
Potri.015G021400
[exp]
211 / 1e-68 AT5G24130 308 / 6e-105 unknown protein
Potri.012G031000
[exp]
204 / 2e-66 AT5G24130 306 / 4e-104 unknown protein
Potri.015G021300
[exp]
108 / 1e-29 AT5G24130 205 / 6e-66 unknown protein
PFAM info
Representative CDS sequence
>Lus10039333 pacid=23175717 polypeptide=Lus10039333 locus=Lus10039333.g ID=Lus10039333.BGIv1.0 annot-version=v1.0
ATGGAACGACATGCTCTGAACATGGTGGTAGCCGGTGCGGCACTTTGGTTACTCGGTTCGATCCACAATGTCTGTCAAATCTACGAGAGGGCTGATGCTC
ATGTTCAGATTTTGCAGCAGGCTGTTCAGCTTCCCTTCTTAATGGGCAGCTTGCTTTTCTTGGTTGGTGCCATCATCAACATTGGAGAGCAATCCAAATG
GGACAACCACGGCCTTCATTTACTGGGGACAACTCTGTTATGGATGTCGATATACGGGAGCCTGATGTTCTTCATGGGAGGGTTGGCGAACGTGGTGAAG
GTGTTCAAGATGCAGCAAATGAACGGGCTGCGACTCGAGAAGCTGAGGGGCGGGGCCAACGAGCGGCTGATTCACGGAAGGGAAGGTCACGTGCCACTGA
TCACTGAAGAGCAGAGGCGGAGGTCAATGAGGTTGCCTGTAATGGATCAGGAACAACCACCGGCGGGTGGTGGCAAGGGTACAGCAGTGGCGACGCCTTA
TAAAGATGTTCTTCTTGGACAGCAGCAGCATTAA
AA sequence
>Lus10039333 pacid=23175717 polypeptide=Lus10039333 locus=Lus10039333.g ID=Lus10039333.BGIv1.0 annot-version=v1.0
MERHALNMVVAGAALWLLGSIHNVCQIYERADAHVQILQQAVQLPFLMGSLLFLVGAIINIGEQSKWDNHGLHLLGTTLLWMSIYGSLMFFMGGLANVVK
VFKMQQMNGLRLEKLRGGANERLIHGREGHVPLITEEQRRRSMRLPVMDQEQPPAGGGKGTAVATPYKDVLLGQQQH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G24130 unknown protein Lus10039333
[exp]
0 1
AT5G24130 unknown protein Lus10039332
[exp]
1.0 0.9097
Lus10028146
[exp]
1.7 0.8546
AT1G28480 roxy19, GRX480 Thioredoxin superfamily protei... Lus10017693
[exp]
4.0 0.8631
AT5G60440 MADS AGL62 AGAMOUS-like 62 (.1) Lus10003940
[exp]
5.5 0.8436
AT5G48490 Bifunctional inhibitor/lipid-t... Lus10016323
[exp]
5.7 0.8488
AT1G15950 IRX4, ATCCR1, C... IRREGULAR XYLEM 4, cinnamoyl c... Lus10030973
[exp]
6.0 0.7672
AT1G33720 CYP76C6 "cytochrome P450, family 76, s... Lus10006323
[exp]
11.8 0.7604
AT3G54420 ATCHITIV, CHIV,... CHITINASE CLASS IV, homolog of... Lus10000453
[exp]
14.0 0.8106
AT5G48540 receptor-like protein kinase-r... Lus10038227
[exp]
15.1 0.8247
AT5G55050 GDSL-like Lipase/Acylhydrolase... Lus10021540
[exp]
18.8 0.8050

Lus10039333 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.